View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12558_low_17 (Length: 270)
Name: NF12558_low_17
Description: NF12558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12558_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 252
Target Start/End: Original strand, 17530161 - 17530406
Alignment:
| Q |
7 |
agaagcagagacagcaacaggatcaagaacccaagggatattcaactgagagcatagattagcagcagctatcatagaaggaagagaagaagatgagagt |
106 |
Q |
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| T |
17530161 |
agaagcagagacagcaacaggatcaagaacccaagggatatccaactgagagcatagcttagcagcagctatcatagcaggaagagaagaagatgagagt |
17530260 |
T |
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| Q |
107 |
gttccaacattaagacagagagcactgacacgtggagtgaattcatgaatctcttcgagtgaatgaaccattgctggtgatgctccagctgataagagag |
206 |
Q |
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| T |
17530261 |
gttccaacattaagacagagagcactgacacgtggagtgaattcatgaatctcttcgagtgaatgaaccattgcaggtgatgcaccagctgataagagag |
17530360 |
T |
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| Q |
207 |
tattcgccattaaatccattgatacaaaattagttatgcattgaat |
252 |
Q |
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| T |
17530361 |
tattcgccattaaatccattgatacaaaattagttatgcattgaat |
17530406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 252
Target Start/End: Complemental strand, 17656375 - 17656130
Alignment:
| Q |
7 |
agaagcagagacagcaacaggatcaagaacccaagggatattcaactgagagcatagattagcagcagctatcatagaaggaagagaagaagatgagagt |
106 |
Q |
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| T |
17656375 |
agaagcagagacagcaacaggatcaagaacccaagggatattcaactgagagcatagcttagcagcagctatcatagcaggaagagaagaagatgagagt |
17656276 |
T |
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| Q |
107 |
gttccaacattaagacagagagcactgacacgtggagtgaattcatga-atctcttcgagtgaatgaaccattgctggtgatgctccagctgataagaga |
205 |
Q |
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| T |
17656275 |
gttccaacattaagacagagagcacttactcgtggagtgaattc-tgatatctcttcgagtgaatgaaccattgctggtgatgctccagctgataagaga |
17656177 |
T |
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| Q |
206 |
gtattcgccattaaatccattgatacaaaattagttatgcattgaat |
252 |
Q |
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| T |
17656176 |
gtattcgccattaaatccattgatacgaaattagttatgcattgaat |
17656130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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