View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12558_low_19 (Length: 258)

Name: NF12558_low_19
Description: NF12558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12558_low_19
NF12558_low_19
[»] chr4 (8 HSPs)
chr4 (1-241)||(52249291-52249531)
chr4 (54-195)||(16497521-16497663)
chr4 (54-193)||(16497714-16497854)
chr4 (54-195)||(2588302-2588444)
chr4 (54-195)||(5650552-5650693)
chr4 (54-188)||(4289897-4290032)
chr4 (54-187)||(39598928-39599062)
chr4 (108-180)||(49577388-49577460)
[»] chr7 (5 HSPs)
chr7 (54-195)||(32775320-32775462)
chr7 (54-195)||(19886721-19886863)
chr7 (54-195)||(12859037-12859179)
chr7 (54-195)||(36167540-36167682)
chr7 (121-174)||(5465521-5465574)
[»] chr3 (6 HSPs)
chr3 (54-195)||(32130312-32130454)
chr3 (54-195)||(7322994-7323134)
chr3 (54-195)||(53208497-53208639)
chr3 (54-195)||(9454772-9454914)
chr3 (119-188)||(7227294-7227363)
chr3 (1-61)||(9454648-9454708)
[»] chr5 (6 HSPs)
chr5 (54-195)||(7992199-7992341)
chr5 (59-173)||(10916936-10917051)
chr5 (94-195)||(5240638-5240739)
chr5 (54-133)||(28276873-28276953)
chr5 (74-180)||(41377658-41377765)
chr5 (74-186)||(41106698-41106811)
[»] chr8 (9 HSPs)
chr8 (54-195)||(1548293-1548435)
chr8 (54-195)||(20900922-20901064)
chr8 (54-195)||(3117860-3118001)
chr8 (54-195)||(34784310-34784452)
chr8 (74-195)||(23033552-23033673)
chr8 (54-157)||(3277646-3277750)
chr8 (59-195)||(29168319-29168455)
chr8 (54-195)||(3376141-3376281)
chr8 (1-57)||(29168536-29168592)
[»] chr2 (5 HSPs)
chr2 (54-195)||(25438445-25438587)
chr2 (49-195)||(44673312-44673459)
chr2 (54-195)||(36536193-36536335)
chr2 (99-180)||(42975683-42975764)
chr2 (59-160)||(37154685-37154786)
[»] chr6 (3 HSPs)
chr6 (72-195)||(13425510-13425633)
chr6 (105-195)||(18133714-18133804)
chr6 (119-195)||(23889854-23889930)
[»] chr1 (4 HSPs)
chr1 (77-195)||(47523847-47523965)
chr1 (54-195)||(50204657-50204798)
chr1 (74-194)||(18990153-18990273)
chr1 (3-61)||(47523697-47523755)
[»] scaffold0302 (1 HSPs)
scaffold0302 (74-195)||(17261-17382)
[»] scaffold0325 (1 HSPs)
scaffold0325 (99-178)||(8541-8620)
[»] scaffold0768 (1 HSPs)
scaffold0768 (96-187)||(4383-4472)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 52249531 - 52249291
Alignment:
Q  1 ttacgtgccaaagcacctctaccgtgcttcgacttcactctggttcggatttactctgttttattgcttggttctctgtttttcctccagtatctctgtt 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  52249531 ttacgtgccacagcacctctaccgtgcttcgacttcactctggttcggatttactctgttttattgcttggttctctgttttttctctagtatctctgtt 52249432  T
Q  101 tttatgtttggttcctcggttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctactgacgaaccatgttactattt 200  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  52249431 tttatgtttggttcctctgttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctactgacgaaccgtgttactattt 52249332  T
Q  201 accttaacaaaatcatgtattcttctaagtgcatttgattt 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  52249331 accttaacaaaatcatgtattcttctaagtgcatttgattt 52249291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 54 - 195
Target Start/End: Complemental strand, 16497663 - 16497521
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||||    
T  16497663 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgcttggctcccctgttttccctctattttccctatatatttctctca 16497564  T
Q  153 attctatcgacaacctatcgatcctactgacgaaccatgttac 195  Q
    |||||||||||||||||||||||||||| ||||||| ||||||    
T  16497563 attctatcgacaacctatcgatcctacttacgaaccgtgttac 16497521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 16497854 - 16497714
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||||    
T  16497854 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgcttggctcccctgttttccctctattttccctatatatttctctca 16497755  T
Q  153 attctatcgacaacctatcgatcctactgacgaaccatgtt 193  Q
    |||||||||||||||||||||||||||| ||||||| ||||    
T  16497754 attctatcgacaacctatcgatcctacttacgaaccgtgtt 16497714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 54 - 195
Target Start/End: Complemental strand, 2588444 - 2588302
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    ||||||||||||||||||||| ||||||||||||| | ||| |||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||    
T  2588444 ctctgttttattgcttggttcctctgtttttcctctaatatatctgtttttatgcttggttcccctgttttccctctattttccctatatatttctctca 2588345  T
Q  153 attctatcgacaacctatcgatcctactgacgaaccatgttac 195  Q
    |||||||| ||||||||||||||||||| ||||||| ||||||    
T  2588344 attctatcaacaacctatcgatcctacttacgaaccgtgttac 2588302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 54 - 195
Target Start/End: Complemental strand, 5650693 - 5650552
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    ||||||||||||||||||||| |||||||||| || | |||||||||||| ||| |||||||||  ||||||||||||||||||||||||||||||||||    
T  5650693 ctctgttttattgcttggttcctctgtttttcttctaatatctctgtttt-atgcttggttcctttgttttccctctattttccctatatatttctctca 5650595  T
Q  153 attctatcgacaacctatcgatcctactgacgaaccatgttac 195  Q
    |||||||||||| ||||||||||||||| ||||||| ||||||    
T  5650594 attctatcgacagcctatcgatcctacttacgaaccgtgttac 5650552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 188
Target Start/End: Complemental strand, 4290032 - 4289897
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    |||| |||| ||||||||||| ||||||||||||| | |||||||||||||||| |||||||||| ||||||||||||||||| |||| |||||||||||    
T  4290032 ctctattttgttgcttggttcctctgtttttcctctattatctctgtttttatgcttggttcctctgttttccctctattttctctatctatttctctca 4289933  T
Q  153 attctatcgacaacctatcgatcctactgacgaacc 188  Q
    | |||||| |||||||| |||||||||| |||||||    
T  4289932 actctatcaacaacctaccgatcctacttacgaacc 4289897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 54 - 187
Target Start/End: Complemental strand, 39599062 - 39598928
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    |||| |||| ||||||||||| ||||||||||||| | |||||||| ||||||| |||||||||| ||||||||||||||||| |||| |||||| ||||    
T  39599062 ctctattttgttgcttggttcctctgtttttcctctattatctctgcttttatgcttggttcctctgttttccctctattttctctatctatttcgctca 39598963  T
Q  153 attctatcgacaacctatcgatcctactgacgaac 187  Q
    | ||| || |||||||| |||||||||| ||||||    
T  39598962 actctgtcaacaacctaccgatcctacttacgaac 39598928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 49577460 - 49577388
Alignment:
Q  108 ttggttcctcggttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctact 180  Q
    |||||||||| ||||||||||||||||| |||| |||||||||||| |||||| |||||||| ||||||||||    
T  49577460 ttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctact 49577388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 32775320 - 32775462
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    ||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||    
T  32775320 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgtttggctcccctgttttccctctattttccctatatatttctctca 32775419  T
Q  153 attctatcgacaacctatcgatcctactgacgaaccatgttac 195  Q
    |||||||||||||||||||||||||||| ||||||| ||||||    
T  32775420 attctatcgacaacctatcgatcctacttacgaaccgtgttac 32775462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 19886721 - 19886863
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||||    
T  19886721 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgattggctcccctgttttccctctattttccctatatatttctctca 19886820  T
Q  153 attctatcgacaacctatcgatcctactgacgaaccatgttac 195  Q
    |||||||||||||||||||||||||||| ||||||| ||||||    
T  19886821 attctatcgacaacctatcgatcctacttacgaaccgtgttac 19886863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 54 - 195
Target Start/End: Complemental strand, 12859179 - 12859037
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    ||||||||||||||||||||| ||||||||||||| | ||| |||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||    
T  12859179 ctctgttttattgcttggttcctctgtttttcctctaatatatctgtttttatgcttggttcccctgttttccctctattttccctatatatttctctca 12859080  T
Q  153 attctatcgacaacctatcgatcctactgacgaaccatgttac 195  Q
    |||||||| ||||||||||||||||||| ||||||| ||||||    
T  12859079 attctatcaacaacctatcgatcctacttacgaaccgtgttac 12859037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 54 - 195
Target Start/End: Complemental strand, 36167682 - 36167540
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||| ||| | ||||| ||||||||||||||||||||||||||||    
T  36167682 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgcttggctcccctgtttttcctctattttccctatatatttctctca 36167583  T
Q  153 attctatcgacaacctatcgatcctactgacgaaccatgttac 195  Q
    ||||||||||||||||||| |||||||| ||||||| ||||||    
T  36167582 attctatcgacaacctatcaatcctacttacgaaccgtgttac 36167540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 5465574 - 5465521
Alignment:
Q  121 tttccctctattttccctatatatttctctcaattctatcgacaacctatcgat 174  Q
    ||||||||||||||| |||| |||||||||||| |||||| |||||||| ||||    
T  5465574 tttccctctattttcactatctatttctctcaactctatcaacaacctaccgat 5465521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 32130312 - 32130454
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||    
T  32130312 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgcttggttcctttgttttccctctattttccctatatatttctctca 32130411  T
Q  153 attctatcgacaacctatcgatcctactgacgaaccatgttac 195  Q
    |||||||||||||||||||||||||||| ||||||| ||||||    
T  32130412 attctatcgacaacctatcgatcctacttacgaaccgtgttac 32130454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 7322994 - 7323134
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||| |||   ||||||||||||||||||||||||||||||||||    
T  7322994 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgcttggctccc--gttttccctctattttccctatatatttctctca 7323091  T
Q  153 attctatcgacaacctatcgatcctactgacgaaccatgttac 195  Q
    |||||||||||||||||||||||||||| ||||||| ||||||    
T  7323092 attctatcgacaacctatcgatcctacttacgaaccgtgttac 7323134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 54 - 195
Target Start/End: Complemental strand, 53208639 - 53208497
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    ||||||||||||||||||||| ||||||||||||| |  ||||||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||||    
T  53208639 ctctgttttattgcttggttcctctgtttttcctctaacatctctgtttttatgcttggctcccctgttttccctctattttccctatatatttctctca 53208540  T
Q  153 attctatcgacaacctatcgatcctactgacgaaccatgttac 195  Q
    |||||||||||||||||||||||||||| | ||||| ||||||    
T  53208539 attctatcgacaacctatcgatcctacttatgaaccgtgttac 53208497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 9454772 - 9454914
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    |||| |||| ||||||||||| ||||||||||||||| |||| |  |||||||| |||||||||| |||||||||| |||||||||||||||||||||||    
T  9454772 ctctattttgttgcttggttcctctgtttttcctccactatccccatttttatgcttggttcctctgttttccctcaattttccctatatatttctctca 9454871  T
Q  153 attctatcgacaacctatcgatcctactgacgaaccatgttac 195  Q
    |||||||| |||||||| |||||||||| ||||||| ||||||    
T  9454872 attctatcaacaacctaccgatcctacttacgaaccgtgttac 9454914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 7227294 - 7227363
Alignment:
Q  119 gttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctactgacgaacc 188  Q
    ||||| ||||||||||| |||| |||||||||||| |||||| |||||||| |||||||| | |||||||    
T  7227294 gtttttcctctattttctctatctatttctctcaactctatcaacaacctaccgatcctaattacgaacc 7227363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 9454648 - 9454708
Alignment:
Q  1 ttacgtgccaaagcacctctaccgtgcttcgacttcactctggttcggatttactctgttt 61  Q
    |||||||||| |||||||| ||||||||| ||||| |||||||||||| ||| ||||||||    
T  9454648 ttacgtgccacagcacctcgaccgtgctttgactttactctggttcggttttgctctgttt 9454708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 54 - 195
Target Start/End: Complemental strand, 7992341 - 7992199
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||    
T  7992341 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgcttggttcccctgttttccctctattttccctatatatttctctca 7992242  T
Q  153 attctatcgacaacctatcgatcctactgacgaaccatgttac 195  Q
    |||||||| ||||||||||||||||||| ||||||| ||||||    
T  7992241 attctatcaacaacctatcgatcctacttacgaaccgtgttac 7992199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 173
Target Start/End: Complemental strand, 10917051 - 10916936
Alignment:
Q  59 ttttattgcttggttct-ctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctcaattct 157  Q
    |||| |||||||||| | |||||||||||| | |||||||| |||||||||||||||||  ||||| ||||||||||| ||||||||||||||||| |||    
T  10917051 ttttgttgcttggtttttctgtttttcctctattatctctgattttatgtttggttcctatgtttttcctctattttctctatatatttctctcaactct 10916952  T
Q  158 atcgacaacctatcga 173  Q
    ||| | || |||||||    
T  10916951 atcaataatctatcga 10916936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 5240638 - 5240739
Alignment:
Q  94 ctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctactgacgaaccatgtt 193  Q
    ||||| ||||||| |||||||||  ||||| ||||||||||  |||| |||||||||||| |||||| ||||||||  ||||||||| | ||||||||||    
T  5240638 ctctgcttttatgcttggttcctatgtttttcctctatttttactatctatttctctcaactctatcaacaacctactgatcctacttatgaaccatgtt 5240737  T
Q  194 ac 195  Q
    ||    
T  5240738 ac 5240739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 28276873 - 28276953
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattt 133  Q
    |||| |||| ||||||||||| ||||||||||||| | |||||||||||| |||||||||||||  ||||| |||||||||    
T  28276873 ctctattttgttgcttggttcctctgtttttcctctattatctctgttttcatgtttggttcctatgtttttcctctattt 28276953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 180
Target Start/End: Complemental strand, 41377765 - 41377658
Alignment:
Q  74 ctctgtttttcctccagtatctctgtttttat--gtttggttcctcggttttccctctattttccctatatatttctctcaattctatcgacaacctatc 171  Q
    |||||||||||||| | | ||||||||||| |  |||||||||||| ||| | ||||||||||| || | | |||||||||| |||||| |||||||| |    
T  41377765 ctctgtttttcctctattttctctgtttttttttgtttggttcctctgttattcctctattttctctgt-tttttctctcaactctatcaacaacctacc 41377667  T
Q  172 gatcctact 180  Q
     ||||||||    
T  41377666 aatcctact 41377658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 186
Target Start/End: Original strand, 41106698 - 41106811
Alignment:
Q  74 ctctgtttttcctccagtatctctgtttttat-gtttggttcctcggttttccctctattttccctatatatttctctcaattctatcgacaacctatcg 172  Q
    |||||||||||||| | | ||||| ||||| | | | |||||||| ||||||||||||||||| |  | | ||| |||||| |||||| ||||||||  |    
T  41106698 ctctgtttttcctctactttctcttttttttttgctcggttcctctgttttccctctattttctcagtttttttttctcaactctatcaacaacctacgg 41106797  T
Q  173 atcctactgacgaa 186  Q
    |||||||| |||||    
T  41106798 atcctacttacgaa 41106811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 1548293 - 1548435
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||||||| | ||||||||||||||||||||||| ||||||||||    
T  1548293 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgcttggttcccctgttttccctctattttccctatacatttctctca 1548392  T
Q  153 attctatcgacaacctatcgatcctactgacgaaccatgttac 195  Q
    |||||||| ||||||||||||||||||| ||||||| ||||||    
T  1548393 attctatcaacaacctatcgatcctacttacgaaccgtgttac 1548435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 20900922 - 20901064
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    ||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||    
T  20900922 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgtttggttcccctgttttccctctattttccctgtatatttctctca 20901021  T
Q  153 attctatcgacaacctatcgatcctactgacgaaccatgttac 195  Q
    |||||||||||||||||| ||||| ||| ||||||| ||||||    
T  20901022 attctatcgacaacctattgatcccacttacgaaccgtgttac 20901064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 3117860 - 3118001
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||||||| ||| |||||||| | | ||||||||||||||||||||||||||||||||    
T  3117860 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttt-atgcttggttcccctgctttccctctattttccctatatatttctctca 3117958  T
Q  153 attctatcgacaacctatcgatcctactgacgaaccatgttac 195  Q
    |||||||| ||||||||||||||||||| ||||||||||||||    
T  3117959 attctatctacaacctatcgatcctacttacgaaccatgttac 3118001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 54 - 195
Target Start/End: Complemental strand, 34784452 - 34784310
Alignment:
Q  54 ctctgttttattgcttggtt-ctctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    |||||||||||||||||||| |||||||||||||| | |||||||||||||||| |||||||| | ||||||||| ||||||||||||||||||||||||    
T  34784452 ctctgttttattgcttggtttctctgtttttcctctaatatctctgtttttatgcttggttcccctgttttccctatattttccctatatatttctctca 34784353  T
Q  153 attctatcgacaacctatcgatcctactgacgaaccatgttac 195  Q
    ||||||||||||||||| |||||||||| || |||| ||||||    
T  34784352 attctatcgacaacctaacgatcctacttacaaaccgtgttac 34784310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 74 - 195
Target Start/End: Original strand, 23033552 - 23033673
Alignment:
Q  74 ctctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctcaattctatcgacaacctatcga 173  Q
    |||||||||||||| | |||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23033552 ctctgtttttcctctaatatctctgtttttatgcttggttcccctgttttccctctattttccctatatatttctctcaattctattgacaacctatcga 23033651  T
Q  174 tcctactgacgaaccatgttac 195  Q
    ||||||| ||||||| ||||||    
T  23033652 tcctacttacgaaccgtgttac 23033673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 3277646 - 3277750
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    ||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  3277646 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgtttggttcccctgttttccctctattttccctatatatttctctca 3277745  T
Q  153 attct 157  Q
    |||||    
T  3277746 attct 3277750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 59 - 195
Target Start/End: Complemental strand, 29168455 - 29168319
Alignment:
Q  59 ttttattgcttggtt-ctctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctcaattct 157  Q
    |||| |||||||||| |||||||||||||| | |||||||||||||||| |||||||||| | |||||| |||||||| |||| ||| |||||||| |||    
T  29168455 ttttgttgcttggtttctctgtttttcctctattatctctgtttttatgcttggttcctctg-tttccccctattttctctatctatctctctcaactct 29168357  T
Q  158 atcgacaacctatcgatcctactgacgaaccatgttac 195  Q
    ||| |||||||| |||||||||| ||||||| ||||||    
T  29168356 atcaacaacctaccgatcctacttacgaaccgtgttac 29168319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 195
Target Start/End: Complemental strand, 3376281 - 3376141
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    |||| |||| || |||||||| ||||||||||||  | |||||||||||||||| |||||||||| ||||| ||||||  ||| |||| ||||| |||||    
T  3376281 ctctattttgttacttggttcctctgtttttcctttattatctctgtttttatgcttggttcctctgtttttcctcta--ttctctatctatttatctca 3376184  T
Q  153 attctatcgacaacctatcgatcctactgacgaaccatgttac 195  Q
    | |||||| |||||||| |||||||||| ||||||| ||||||    
T  3376183 actctatcaacaacctaccgatcctacttacgaaccgtgttac 3376141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 29168592 - 29168536
Alignment:
Q  1 ttacgtgccaaagcacctctaccgtgcttcgacttcactctggttcggatttactct 57  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||| ||| ||||    
T  29168592 ttacgtgccacagcacctcgaccgtgcttcgacttcactctggttcggttttgctct 29168536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 25438445 - 25438587
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    ||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||    
T  25438445 ctctgttttattgcttggttcctctgtttttcctctaatatctctgtttttatgtttggctcccctgttttccctctattttccctatatatttctctca 25438544  T
Q  153 attctatcgacaacctatcgatcctactgacgaaccatgttac 195  Q
     || |||||||||||||||||||||||| ||||||| ||||||    
T  25438545 cttatatcgacaacctatcgatcctacttacgaaccgtgttac 25438587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 49 - 195
Target Start/End: Original strand, 44673312 - 44673459
Alignment:
Q  49 atttactctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttc 147  Q
    |||| ||||||||||||||||||||| | ||||||||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||||||||||    
T  44673312 atttcctctgttttattgcttggttcctttgtttttcctctaatatctctgtttttatgcttggttcccttgttttccctctattttccctatatatttc 44673411  T
Q  148 tctcaattctatcgacaacctatcgatcctactgacgaaccatgttac 195  Q
    ||||||||||||| ||||||||||||||||||| ||||||| ||||||    
T  44673412 tctcaattctatcaacaacctatcgatcctacttacgaaccgtgttac 44673459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 54 - 195
Target Start/End: Complemental strand, 36536335 - 36536193
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    |||| |||| ||||||||||| ||||||||||||| | |||||||||||||||| |||||||||| ||||| ||||||||||| |||| |||| ||||||    
T  36536335 ctctattttgttgcttggttcctctgtttttcctctattatctctgtttttatgcttggttcctctgtttttcctctattttctctatctattcctctca 36536236  T
Q  153 attctatcgacaacctatcgatcctactgacgaaccatgttac 195  Q
    | |||||| |||||||| |||||||||| || |||| ||||||    
T  36536235 actctatcaacaacctaccgatcctacttacaaaccgtgttac 36536193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 42975764 - 42975683
Alignment:
Q  99 tttttatgtttggttcctcggttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctact 180  Q
    ||||| || |||||||||| ||||| ||||||||||| || | | |||||||||| |||||| |||||||| ||||||||||    
T  42975764 tttttttgcttggttcctccgtttttcctctattttctctgtttttttctctcaactctatcaacaacctaccgatcctact 42975683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 37154786 - 37154685
Alignment:
Q  59 ttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctcaattct 157  Q
    |||| ||||||||||| |||||||| |||  | ||| |||||||| |||  ||||||||  |||| |||||||||||| ||||| |||||||||||||||    
T  37154786 ttttgttgcttggttcctctgttttccctttattatatctgtttt-atgcatggttcctttgtttaccctctattttctctatacatttctctcaattct 37154688  T
Q  158 atc 160  Q
    |||    
T  37154687 atc 37154685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 13425633 - 13425510
Alignment:
Q  72 ttctctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctcaattctatcgacaacctatc 171  Q
    |||||||||||||||| | |||||||||||||||| ||| || | | |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13425633 ttctctgtttttcctctaatatctctgtttttatgcttgttttccctgttttccctctattttccctatatatttctctcaattctatcaacaacctatc 13425534  T
Q  172 gatcctactgacgaaccatgttac 195  Q
    ||||||||| ||||||| ||||||    
T  13425533 gatcctacttacgaaccgtgttac 13425510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 195
Target Start/End: Complemental strand, 18133804 - 18133714
Alignment:
Q  105 tgtttggttcctcggttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctactgacgaaccatgttac 195  Q
    ||||||||||||| ||||| ||||||||||| |||| ||||||| |||| |||||| | |||||| |||||||||| | ||||| ||||||    
T  18133804 tgtttggttcctctgtttttcctctattttctctatttatttctgtcaactctatcaaaaacctaccgatcctacttatgaaccgtgttac 18133714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 23889930 - 23889854
Alignment:
Q  119 gttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctactgacgaaccatgttac 195  Q
    ||||| ||||||||||| |||| ||||||| |||| |||||| | |||||| |||||||||| ||||||| ||||||    
T  23889930 gtttttcctctattttctctatttatttctgtcaactctatcaaaaacctaccgatcctactaacgaaccgtgttac 23889854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 195
Target Start/End: Original strand, 47523847 - 47523965
Alignment:
Q  77 tgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcc 176  Q
    ||||||||||| | | | |||||||||||| |||||||||| ||||||| |||||||||  | | |||||||||||| |||||| |||||||| ||||||    
T  47523847 tgtttttcctctattgtgtctgtttttatgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcc 47523946  T
Q  177 tactgacgaaccatgttac 195  Q
    |||| ||||||| ||||||    
T  47523947 tacttacgaaccgtgttac 47523965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 50204657 - 50204798
Alignment:
Q  54 ctctgttttattgcttggttc-tctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctca 152  Q
    ||||||||| ||| ||| ||| ||||||||||||| | | ||||||||||| || |||||||||| ||||| ||||||||||| || | | |||| ||||    
T  50204657 ctctgtttttttgtttgtttcctctgtttttcctctactttctctgtttttttgcttggttcctctgtttttcctctattttctctgt-tttttcactca 50204755  T
Q  153 attctatcgacaacctatcgatcctactgacgaaccatgttac 195  Q
    | |||||| ||||||||  |||| |||| ||||| | ||||||    
T  50204756 actctatcaacaacctactgatcttacttacgaagcgtgttac 50204798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 194
Target Start/End: Complemental strand, 18990273 - 18990153
Alignment:
Q  74 ctctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctcaattctatcgacaacctatcga 173  Q
    |||||||||||||| | | ||||||||||| || ||||||| |  ||||| ||||||||||  ||   |||||||||||| |||||| |||||||| |||    
T  18990273 ctctgtttttcctctattttctctgtttttttgcttggttcttgtgtttttcctctattttatcttattatttctctcaactctatcaacaacctaccga 18990174  T
Q  174 tcctactgacgaaccatgtta 194  Q
    ||| ||  || ||||||||||    
T  18990173 tccaacatacaaaccatgtta 18990153  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 47523697 - 47523755
Alignment:
Q  3 acgtgccaaagcacctctaccgtgcttcgacttcactctggttcggatttactctgttt 61  Q
    |||||||| |||||||| || |||||||||||| ||| |||||||| ||| ||||||||    
T  47523697 acgtgccacagcacctcgactgtgcttcgactttactatggttcggttttgctctgttt 47523755  T

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Target: scaffold0302 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 195
Target Start/End: Original strand, 17261 - 17382
Alignment:
Q  74 ctctgtttttcctccagtatctctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctcaattctatcgacaacctatcga 173  Q
    ||||| |||||||| | ||||| |||||||||| |||||||||  || |||  ||||||||| || | |||||||||||| |||||| ||||  |||||     
T  17261 ctctggttttcctctattatctttgtttttatgattggttcctatgtattctttctattttctctgtctatttctctcaactctatcaacaaagtatcgc 17360  T
Q  174 tcctactgacgaaccatgttac 195  Q
    ||||||| ||||||| ||||||    
T  17361 tcctacttacgaaccgtgttac 17382  T

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Target: scaffold0325 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 8541 - 8620
Alignment:
Q  99 tttttatgtttggttcctcggttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatccta 178  Q
    ||||| || |||||||||| ||||| ||||||||||| |||| |||||| ||||| |||||| | |||||| ||||||||    
T  8541 tttttttgcttggttcctctgtttttcctctattttctctatttatttcactcaactctatcaaaaacctaacgatccta 8620  T

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Target: scaffold0768 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0768
Description:

Target: scaffold0768; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 187
Target Start/End: Original strand, 4383 - 4472
Alignment:
Q  96 ctgtttttatgtttggttcctcggttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctactgacgaac 187  Q
    |||||||| || ||| |||||| ||||| ||||||||||| || | | |||||||||| |||||| || |||||||||||||||| ||||||    
T  4383 ctgtttttttgcttgtttcctctgtttttcctctattttctctgt-tttttctctcaactctatcaac-acctatcgatcctacttacgaac 4472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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