View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12558_low_27 (Length: 238)
Name: NF12558_low_27
Description: NF12558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12558_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 36673332 - 36673567
Alignment:
| Q |
1 |
caagcattgttgtcctttggtctggaaaagggtgaacacactcacaggcaatcttaatgagagtacaaacttcattttcaagtccttccctggtcaaaga |
100 |
Q |
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| T |
36673332 |
caagcattgttggcctttggtctggaaaagggtgaacacactcacaggcaatcttaatgagagtacaaacttcattttcaagtccttccccggtcaaaga |
36673431 |
T |
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| Q |
101 |
tttatcaacgacgttataaaaactcaaagggttaccacatagattagtagtgtcagataaacgcgacaattcattatatgttttccctgtcatcaattca |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36673432 |
tttatcaatgacgttataaaaactcaaagggttaccacatagattagtagtgtcagatgaacgcgacaattcattatatgttttccctgtcatcaattca |
36673531 |
T |
|
| Q |
201 |
aaaagcacacttccaaagtcgtagacatccttcttc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
36673532 |
aaaagcacacttccaaagtcgtagacatccttcttc |
36673567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 36676087 - 36676322
Alignment:
| Q |
1 |
caagcattgttgtcctttggtctggaaaagggtgaacacactcacaggcaatcttaatgagagtacaaacttcattttcaagtccttccctggtcaaaga |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36676087 |
caagcattgttggcctttggtctggaaaagggtgaacacactcacaggcaatcttaatgagagtacaaacttcattttcaagtccttccccggtcaaaga |
36676186 |
T |
|
| Q |
101 |
tttatcaacgacgttataaaaactcaaagggttaccacatagattagtagtgtcagataaacgcgacaattcattatatgttttccctgtcatcaattca |
200 |
Q |
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| T |
36676187 |
tttatcaataacattataaaaactcaaagggttaccacatagattagtagtgtcagatgaacgcgacaattcattatatgttttccctgtcatcaattca |
36676286 |
T |
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| Q |
201 |
aaaagcacacttccaaagtcgtagacatccttcttc |
236 |
Q |
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| T |
36676287 |
aaaagcacacttccaaagtcgtagacatccttcttc |
36676322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 36695616 - 36695851
Alignment:
| Q |
1 |
caagcattgttgtcctttggtctggaaaagggtgaacacactcacaggcaatcttaatgagagtacaaacttcattttcaagtccttccctggtcaaaga |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36695616 |
caagcattgttgacctttggtctggaaaagggtgaacacactcacaggcaatcttaatgagagtacaaacttcattttcaagtccttccccggtcaaaga |
36695715 |
T |
|
| Q |
101 |
tttatcaacgacgttataaaaactcaaagggttaccacatagattagtagtgtcagataaacgcgacaattcattatatgttttccctgtcatcaattca |
200 |
Q |
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| T |
36695716 |
tttatcaataacattataaaaactcaaagggttaccacatagattagtagtgtcagatgaacgcgacaattcattatatgttttccctgtcatcaattca |
36695815 |
T |
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| Q |
201 |
aaaagcacacttccaaagtcgtagacatccttcttc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
36695816 |
aaaagcacacttccaaagtcgtagacatccttcttc |
36695851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 35 - 236
Target Start/End: Original strand, 36683794 - 36683995
Alignment:
| Q |
35 |
aacacactcacaggcaatcttaatgagagtacaaacttcattttcaagtccttccctggtcaaagatttatcaacgacgttataaaaactcaaagggtta |
134 |
Q |
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|||||||||||| |||||||| | ||||| ||| ||| ||||||||| ||||| || | || ||||||||||| | | ||||||||| | |||||||| |
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| T |
36683794 |
aacacactcacatgcaatctttaggagagcacatactccattttcaaatccttgcccaggcagagatttatcaatggcattataaaaatttgaagggtta |
36683893 |
T |
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| Q |
135 |
ccacatagattagtagtgtcagataaacgcgacaattcattatatgttttccctgtcatcaattcaaaaagcacacttccaaagtcgtagacatccttct |
234 |
Q |
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| T |
36683894 |
tcatagagattagtggtggtggatgaacgagtcagttcgttatatgtttttcctgtaatcagttcaaaaagcacacttccaaagtcgtagacatccttct |
36683993 |
T |
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| Q |
235 |
tc |
236 |
Q |
| |
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|| |
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| T |
36683994 |
tc |
36683995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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