View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12558_low_3 (Length: 520)
Name: NF12558_low_3
Description: NF12558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12558_low_3 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: scaffold0361 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 11578 - 11076
Alignment:
| Q |
1 |
tttccgcaaaatcaagatttacttttttctattattagtcaatatttatttttatgaaaatcaatnnnnnnnncgtttgtttttgtgcgatttgtgaggt |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11578 |
tttccgcaaaatcaagatttacttttttctatttttagtcaatatttatttttatgaaaatcaataaaaaaaacgtttgtttttgtgcgatttgtgaggt |
11479 |
T |
|
| Q |
101 |
ttattattcgtactgaataacactgctcaatatttata-gctgatcatcttctgcattctggcaaaagtcttgagtaaattaatatcctcctatttaatc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11478 |
ttattattcgtactgaataacactgctcaatatttataagctgatcatcttctacattctggcaaaagtcttgagtaaattaatatcctcctatttaatc |
11379 |
T |
|
| Q |
200 |
cttccaattaatcaaaagatcaaagtataaaacatgattgttattcgcatgcttgaatggggaaacacatcatgaatagtggcttccatttcctggcatt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11378 |
cttccaattaatcaaaagatcaaagtataaaacatgattgttattcgcatgcttgcatggggaaacacatcatgaatagtggcttccatttcctggcatt |
11279 |
T |
|
| Q |
300 |
acttcgagtttccccgttgtggctgccatacaagtggtaaatcacgtctttcgcagctgcaactttgagggcaatcgaaaactgtccttttcccatctca |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11278 |
acttcgagtttccccgttgtggctgccatacaagtggtaaatcacgtctttcgcagctgcaactttgagggcaatcgaaaactgtccttttcccatctca |
11179 |
T |
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| Q |
400 |
tcataatctactgattagtagtttgagggtagaacaatgagattttgtaccnnnnnnnnagaaacatatagaaagttagaaacccttggtctgactctca |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11178 |
tcataatctactgattagtagtttgagggtagaacaatgagattttgtaccttttttttagaaacatatagaaagttagaaacccttggtctgactctca |
11079 |
T |
|
| Q |
500 |
tat |
502 |
Q |
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||| |
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| T |
11078 |
tat |
11076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 4946906 - 4946621
Alignment:
| Q |
1 |
tttccgcaaaatcaagatttacttttttctattattagtcaatatttatttttatgaaaatcaatnnnnnnnncgtttgtttttgtgcgatttgtgaggt |
100 |
Q |
| |
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||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
4946906 |
tttccgcaaaa-caagatttacttttttctatttttagtcaatatttatttttatgaaaatcaataaaaaaa-cgtttgtttttgtgcgatttttgaggt |
4946809 |
T |
|
| Q |
101 |
ttattattcgtactgaataacactgctcaatatttatag-ctgatcatcttctgcattctggcaaaagtcttgagtaaattaatatcctcctatttaatc |
199 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
4946808 |
ttattattcgtactgaataacactgctcaacatttataaactgattatcttctacattctgtcaaaagttttgagtaaattaatatcctcctatttaatc |
4946709 |
T |
|
| Q |
200 |
cttccaattaatcaaaagatcaaagtataaaacatgattgttattcgcatgcttgaatggggaaacacatcatgaatagtggcttcca |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
4946708 |
cttccaattaatcaaaagatcaaagtataaaacatgattgttattcgcatgcttgcatgggtaaacacatcatgaatagtggcttcca |
4946621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 278 - 419
Target Start/End: Complemental strand, 4945964 - 4945822
Alignment:
| Q |
278 |
gtggcttccatttcctggcattacttcgagtttccccgttgtggctgccatacaagtggtaaatcacgtctttcgcagctgcaactttgagggcaatcga |
377 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
4945964 |
gtggcttccatttcctggcattacttcgagtttccc-gttgtggctgccatacaagtggtaaatcacgtcttttgcagctgcaactttgatggcaatcga |
4945866 |
T |
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| Q |
378 |
aaactgtcctttt-cccatctcatcataatc-tactgattagta |
419 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
4945865 |
aaactgtccttttacccatctcatcataatcttactgattagta |
4945822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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