View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12558_low_4 (Length: 470)
Name: NF12558_low_4
Description: NF12558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12558_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 167 - 460
Target Start/End: Original strand, 34262285 - 34262580
Alignment:
| Q |
167 |
tattggcttatggtagtattgtacagatccattaatggaatgcacaatata--gaacttaaaatgtatcattattaaccatacttgacaagaaaaaagta |
264 |
Q |
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| T |
34262285 |
tattggcttatggtagtattgtacagatccattaatggaatgcacaatatatagaacttaaaatgtatcattattaaccatacttgacaagaaaaaagta |
34262384 |
T |
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| Q |
265 |
cattgattgaacactactaaatttaaccaagnnnnnnnnnnnctacaaccttagaactaattggtttgaatgaaaatgaacgcctcttacaagaaaacat |
364 |
Q |
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| T |
34262385 |
cattgattgaacactactaaatttaaccaagaaaaaaaaaaactacaaccttagaactaattggtttgaatgaaaatgaacgcctcttacaagaaaacat |
34262484 |
T |
|
| Q |
365 |
tttatgttttttcttgattcatggtatcacatagagctatttctttcttctcctgctgatccattgtatcacaaagaacaatcccttcggtctctg |
460 |
Q |
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| T |
34262485 |
tttatgttttttcttgattcatggtatcacatagagctatttctttcttctcttgccgatccattgtatcacaaagaacaatcccttcggtctctg |
34262580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 378 - 451
Target Start/End: Original strand, 35621419 - 35621492
Alignment:
| Q |
378 |
ttgattcatggtatcacatagagctatttctttcttctcctgctgatccattgtatcacaaagaacaatccctt |
451 |
Q |
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| T |
35621419 |
ttgattcatggcatcatatatagctaattctttcttctcttgttgatccattgtatcacaaagaacaatccctt |
35621492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 27218467 - 27218382
Alignment:
| Q |
1 |
ctaaaggagaaataatagaacaccaggagaaaattggtctttggggaataacaccaccttcagcagatgctaccgttgttgaaaaa |
86 |
Q |
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| T |
27218467 |
ctaaagaacaaatattagaacacaagaagaaaattggcctttggggaataacactaccttcagcaaatgcaaccgttgttggaaaa |
27218382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 27211491 - 27211403
Alignment:
| Q |
1 |
ctaaaggagaaataatagaacaccaggagaaaattggtctttggggaataacaccaccttcagcagatgctaccgttgttgaaaaaact |
89 |
Q |
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| T |
27211491 |
ctaaagaacaaataatagaacaagagaagaaaattggcctttggagaataacactaccttcagcagatgcaactgttgttggaaaaact |
27211403 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 5e-88; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 200 - 442
Target Start/End: Original strand, 37576264 - 37576503
Alignment:
| Q |
200 |
aatggaatgcacaatatagaacttaaaatgtatcattattaaccatacttgacaagaaaaaagtacattgattgaacactactaaatttaaccaagnnnn |
299 |
Q |
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| T |
37576264 |
aatggaatgcacaacatagaacataaaatgtatcattattaaccatacttgacaagaaaaaagtacattgattgaacacta---aatttaaccaagaaaa |
37576360 |
T |
|
| Q |
300 |
nnnnnnnctacaaccttagaactaattggtttgaatgaaaatgaac-gcctcttacaagaaaacattttatgttttttcttgattcatggtatcacatag |
398 |
Q |
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| T |
37576361 |
aaaataactacaacctt-gaactaattggtttgaatgaaaatgaactgcctcttacaagaaaacattttatgttttttcttgattcatggtatcacatag |
37576459 |
T |
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| Q |
399 |
agctatttctttcttctcctgctgatccattgtatcacaaagaa |
442 |
Q |
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| T |
37576460 |
agctatttctttcttctcttgctgatccattgtaccacaaagaa |
37576503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 37579383 - 37579291
Alignment:
| Q |
1 |
ctaaaggagaaataatagaacaccaggagaaaattggtctttggggaataacaccaccttcagcagatgctaccgttgttgaaaaaacttttt |
93 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| |||| |
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| T |
37579383 |
ctaaaggagaaataatagaacgccagaagaaaattggtctttggggaataacactaccttcagcagatgcaaccgttgttggaaaaacatttt |
37579291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 37578621 - 37578558
Alignment:
| Q |
100 |
ctattttctgtttacattttgtaaggatatactgtagttgtaacaatatttgttctgtttgaac |
163 |
Q |
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| T |
37578621 |
ctattttttgtttacgttttgtaaggaaatactgtagttgtaacattatttgttatgcttgaac |
37578558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 460
Target Start/End: Original strand, 37602341 - 37602399
Alignment:
| Q |
402 |
tatttctttcttctcctgctgatccattgtatcacaaagaacaatcccttcggtctctg |
460 |
Q |
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| T |
37602341 |
tatttctctcctctcttgttgatccattgtatcacaaagaacaatccctttagtctctg |
37602399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 37602181 - 37602245
Alignment:
| Q |
223 |
taaaatgtatcattattaaccatacttgacaagaaaaaagtacattgattgaacactactaaatttaac |
291 |
Q |
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| T |
37602181 |
taaaatgtatcattattaaccctactt-acaag-aaaaagtatatt--ttgaacactactaaatttaac |
37602245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 382 - 450
Target Start/End: Complemental strand, 14544293 - 14544225
Alignment:
| Q |
382 |
ttcatggtatcacatagagctatttctttcttctcctgctgatccattgtatcacaaagaacaatccct |
450 |
Q |
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||||||| |||||| | |||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
14544293 |
ttcatggcatcacacaaagctatttctttcttctcttgttgatccattgtatcacaaagaacaatccct |
14544225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 376 - 446
Target Start/End: Original strand, 14579288 - 14579358
Alignment:
| Q |
376 |
tcttgattcatggtatcacatagagctatttctttcttctcctgctgatccattgtatcacaaagaacaat |
446 |
Q |
| |
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||||||||||||| |||| | | |||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
14579288 |
tcttgattcatggcatcagacatagctatttctttcttctcttgttgatccattgtatcacaaagaacaat |
14579358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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