View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12558_low_5 (Length: 454)
Name: NF12558_low_5
Description: NF12558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12558_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 45 - 440
Target Start/End: Original strand, 16577782 - 16578177
Alignment:
| Q |
45 |
gtgacatcatactaattaaatgaaagatgacaaagaaaaagtgatagatgaacgtaagataaatgccaccaccatacgtgcctatggatgcatcattcaa |
144 |
Q |
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| T |
16577782 |
gtgacatcatactaattaaatgaaagatgacaaagaaaaagtgatagatgaacgtaagataaatgccaccaccatacgtgcctatggatgcatcattcaa |
16577881 |
T |
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| Q |
145 |
gtgcaatgtttcacaattttcctttagaaaaataatcaaagataatatttaacataactagataaaatttatttttgtttgtttcttctatccataatgt |
244 |
Q |
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| T |
16577882 |
gtgcaatgtttcaaaattttcctttagaaaaataatcaaagataatatttaacataactagataaaaattatttttgtttgtttcttctatccataatgt |
16577981 |
T |
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| Q |
245 |
catctaattacatttttcacattagcatgatcaacttgggtatgccccttagttatataaattgaggtgcttgaagaacatttttcatgagcttctctta |
344 |
Q |
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| T |
16577982 |
catctaattacatttttcacattagcatgatcaacttgggtatgccccttagttatataaattgaggtgcttgaagaacatttttcatgagcttctctta |
16578081 |
T |
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| Q |
345 |
gttgtgtgtaatttacataagaaaagagaaaaaagttttgttcttaccatggcttcatcactttttatgccttcatccgtaagctcaatattcttc |
440 |
Q |
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| T |
16578082 |
gttgtgtgtaatttacataagaaaagagaaaaaagttttgttcttaccatggcttcatcactttttatgccttcatccgtaagctcaatattcttc |
16578177 |
T |
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