View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12558_low_6 (Length: 422)

Name: NF12558_low_6
Description: NF12558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12558_low_6
NF12558_low_6
[»] chr7 (3 HSPs)
chr7 (20-414)||(39954714-39955108)
chr7 (144-249)||(10575471-10575576)
chr7 (191-263)||(354475-354547)
[»] chr4 (3 HSPs)
chr4 (143-393)||(53328654-53328904)
chr4 (167-393)||(22898493-22898719)
chr4 (167-393)||(22950161-22950387)
[»] chr5 (1 HSPs)
chr5 (143-390)||(26358540-26358787)
[»] chr3 (7 HSPs)
chr3 (144-414)||(24919879-24920149)
chr3 (144-414)||(24981965-24982235)
chr3 (158-414)||(24923467-24923723)
chr3 (152-414)||(25084957-25085219)
chr3 (144-402)||(31825550-31825808)
chr3 (152-414)||(24497260-24497522)
chr3 (167-414)||(21584613-21584860)
[»] chr2 (1 HSPs)
chr2 (161-393)||(41027512-41027744)
[»] chr8 (1 HSPs)
chr8 (144-327)||(14261025-14261208)


Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 20 - 414
Target Start/End: Original strand, 39954714 - 39955108
Alignment:
Q  20 aattaagatacaagtccaaatactagaaccacagaactaagcattcaaccagatctaagactactaaatttatattaaccagatttagaactaaatcgac 119  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954714 aattaagatacaagtccaaatactagaaccacaggactaagcattcaaccagatctaagactactaaatttatattaaccagatttagaactaaatcgac 39954813  T
Q  120 cagaacaaactaaaccctaaatttaaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcct 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954814 cagaacaaactaaaccctaaatttaaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcct 39954913  T
Q  220 cctagcatgctcagtgtaagtaacagcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39954914 cctagcatgctcagtgtaagtaacagcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctgattctc 39955013  T
Q  320 ttcacaccaccacgccttgcaagacgacgaatcgcaggcttggttatgccttggatgttatcgcgaagaacctttctgtgcctctctgctcctcc 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  39955014 ttcacaccaccacgccttgcaagacgacgaatcgcaggcttggttatgccttggatgttgtcgcgaagaacctttctgtgcctctttgctcctcc 39955108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 144 - 249
Target Start/End: Complemental strand, 10575576 - 10575471
Alignment:
Q  144 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 243  Q
    ||||||||||||| ||||| || ||||| || ||||| || || || ||||||||||| || || |||||||||||||| ||||||||||||||||||||    
T  10575576 aaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaagtaac 10575477  T
Q  244 agcatc 249  Q
    ||||||    
T  10575476 agcatc 10575471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 191 - 263
Target Start/End: Complemental strand, 354547 - 354475
Alignment:
Q  191 acaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattct 263  Q
    ||||||||||| || || | ||| |||||||| |||||||||||||||||||||||||||| |||| ||||||    
T  354547 acaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattct 354475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 143 - 393
Target Start/End: Complemental strand, 53328904 - 53328654
Alignment:
Q  143 taaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaa 242  Q
    ||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||| || |||||||| || |  | ||||||||| ||||| || |    
T  53328904 taacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtga 53328805  T
Q  243 cagcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaag 342  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||| |  || || || | ||||||||||||||| ||||| ||    
T  53328804 cagcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgag 53328705  T
Q  343 acgacgaatcgcaggcttggttatgccttggatgttatcgcgaagaacctt 393  Q
    |||||||||||||||||| || || || |||||||||||||| ||||||||    
T  53328704 acgacgaatcgcaggctttgtgattccctggatgttatcgcgcagaacctt 53328654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 167 - 393
Target Start/End: Complemental strand, 22898719 - 22898493
Alignment:
Q  167 cttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattctcaa 266  Q
    |||||||| |||||||| ||||| || |||||||| || ||||| || ||||| ||||| |||||||||||||| |||||||| | |||||||||||| |    
T  22898719 cttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacattctcca 22898620  T
Q  267 gaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaagacgacgaatcgcaggcttggttat 366  Q
     ||| ||||| |  || || || ||||| || || || | ||| || || | |||||| || || |  |  ||||||||||||||||| ||||| |||||    
T  22898619 aaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctttgttat 22898520  T
Q  367 gccttggatgttatcgcgaagaacctt 393  Q
     || |||||||| || ||||| |||||    
T  22898519 tccctggatgttgtcacgaagcacctt 22898493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 167 - 393
Target Start/End: Complemental strand, 22950387 - 22950161
Alignment:
Q  167 cttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattctcaa 266  Q
    |||||||| |||||||| ||||| || |||||||| || ||||| || ||||| ||||| |||||||||||||| |||||||| | |||||||||||| |    
T  22950387 cttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacattctcca 22950288  T
Q  267 gaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaagacgacgaatcgcaggcttggttat 366  Q
     ||| ||||| |  || || || ||||| || || || | ||| || || | |||||| || || |  |  ||||||||||||||||| ||||| |||||    
T  22950287 aaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctttgttat 22950188  T
Q  367 gccttggatgttatcgcgaagaacctt 393  Q
     || |||||||| || ||||| |||||    
T  22950187 tccctggatgttgtcacgaagcacctt 22950161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 143 - 390
Target Start/End: Original strand, 26358540 - 26358787
Alignment:
Q  143 taaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaa 242  Q
    ||||| || ||||| || || |||||||| ||||||||||| ||||| ||||||||||| || ||||| ||||| |  | |||||| ||||||||||| |    
T  26358540 taacccccaaaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaactgttttgcgacgagcatgttcagtgtaagtga 26358639  T
Q  243 cagcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaag 342  Q
    ||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||| || || |  || ||||||||||||||||||||    
T  26358640 cagcatcacgaataacattctcaagaaatatcttgagaacaccacgagtttcttcatagatcagaccactgatacgttttacaccaccacgccttgcaag 26358739  T
Q  343 acgacgaatcgcaggcttggttatgccttggatgttatcgcgaagaac 390  Q
    |||||||||||| || ||||| || || || |||||||| ||||||||    
T  26358740 acgacgaatcgcgggtttggtaattccctgaatgttatctcgaagaac 26358787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 144 - 414
Target Start/End: Original strand, 24919879 - 24920149
Alignment:
Q  144 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 243  Q
    |||| ||||| || ||||| || |||||||||||||| | |||||| || ||||||||||| || || || ||||||||||| ||||||||||| || ||    
T  24919879 aacctccgaatccatagagggttcttccctgcctcttcaaagcatagacgacatccatggctgtcactgtcttcctcctagcgtgctcagtgtatgtcac 24919978  T
Q  244 agcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaaga 343  Q
    |||||||||||| |||||||| |  |||||||| |  ||||| |  || ||||| ||||| | |||||| ||||||||||||||||| |  ||||| |      
T  24919979 agcatcacgaatgacattctctaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctcttcttgccaat 24920078  T
Q  344 cgacgaatcgcaggcttggttatgccttggatgttatcgcgaagaacctttctgtgcctctctgctcctcc 414  Q
    |||||||| ||||||||||| || || ||||||||||| |||||||| || || ||||||| ||| |||||    
T  24920079 cgacgaattgcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacctcc 24920149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 144 - 414
Target Start/End: Complemental strand, 24982235 - 24981965
Alignment:
Q  144 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 243  Q
    ||||||||||||| ||||| || ||||| || ||||| | |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  24982235 aaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaac 24982136  T
Q  244 agcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaaga 343  Q
     |||||||| || |||||||| |  |||||||| |  ||||| |  || ||||| || || | ||| || |||||||| |||||||| |  ||||| |      
T  24982135 tgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacctcttcttgccaat 24982036  T
Q  344 cgacgaatcgcaggcttggttatgccttggatgttatcgcgaagaacctttctgtgcctctctgctcctcc 414  Q
    |||||||| ||||||||||| || || ||||||||||| |||||||| || || ||||||| ||| |||||    
T  24982035 cgacgaatagcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacctcc 24981965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 158 - 414
Target Start/End: Original strand, 24923467 - 24923723
Alignment:
Q  158 tagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatca 257  Q
    ||||| || |||||||| ||||| | |||||| |||||||||||||| || || || |||||||| || ||||||||||| || |||||||||||||| |    
T  24923467 tagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcactgtcttcctccttgcgtgctcagtgtatgtcacagcatcacgaatga 24923566  T
Q  258 cattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaagacgacgaatcgcagg 357  Q
    ||||||| |  |||||||| |  ||||| |  || ||||| ||||| | ||| || |||||||| |||||||| |  ||||| |  |||||||| |||||    
T  24923567 cattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcagg 24923666  T
Q  358 cttggttatgccttggatgttatcgcgaagaacctttctgtgcctctctgctcctcc 414  Q
    |||||| || || ||||||||||| |||||||||||||| ||||||| ||| |||||    
T  24923667 cttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacctcc 24923723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 152 - 414
Target Start/End: Complemental strand, 25085219 - 25084957
Alignment:
Q  152 aaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcac 251  Q
    ||||| ||||| || |||||||| ||||| | |||||| |||||||||||||| || ||||| |||||||| || ||||||||||| ||||| |||||||    
T  25085219 aaaccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcac 25085120  T
Q  252 gaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaagacgacgaat 351  Q
    | ||||||||||| |  |||||||| |  ||||| |  || ||||| || || | ||| || ||||||||||||||||| |  || || |  | ||||||    
T  25085119 ggatcacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttcacaccacctcttctcgccaatctacgaat 25085020  T
Q  352 cgcaggcttggttatgccttggatgttatcgcgaagaacctttctgtgcctctctgctcctcc 414  Q
     ||||||||||| || || ||||||||||| |||||||||||||| ||||||| ||| |||||    
T  25085019 ggcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacctcc 25084957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 144 - 402
Target Start/End: Original strand, 31825550 - 31825808
Alignment:
Q  144 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 243  Q
    |||| ||||| || ||||| || |||||||||||||| | |||||| ||||||||||| |||||||| || ||||||||||| ||||||||||| || ||    
T  31825550 aacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtgac 31825649  T
Q  244 agcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaaga 343  Q
     |||||||| || |||||||| |  |||||||| |  ||||| | ||| ||||| ||||| | ||| || || |||||||||||||| |  || || |      
T  31825650 cgcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaat 31825749  T
Q  344 cgacgaatcgcaggcttggttatgccttggatgttatcgcgaagaacctttctgtgcct 402  Q
    |||||||| |||||||| || || || |||||||| ||||| ||||| |||||||||||    
T  31825750 cgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcct 31825808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 152 - 414
Target Start/End: Original strand, 24497260 - 24497522
Alignment:
Q  152 aaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcac 251  Q
    ||||| ||||| || ||||| || ||||| | |||||| |||||||||||||| || ||||| |||||||| || ||||||||||| ||||| |||||||    
T  24497260 aaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcac 24497359  T
Q  252 gaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaagacgacgaat 351  Q
    | |||||||| || |  |||||||| |  ||||| |  || ||||| ||||| |  || || |||||||| |||||||| |  ||||| |  ||||||||    
T  24497360 ggatcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatccactgattctcttaacaccacctcttcttgccaatcgacgaat 24497459  T
Q  352 cgcaggcttggttatgccttggatgttatcgcgaagaacctttctgtgcctctctgctcctcc 414  Q
     ||||||||||| || || |||||||| || ||||||||||| || ||||||| ||| |||||    
T  24497460 agcaggcttggtgataccctggatgttgtcacgaagaaccttcctatgcctctttgcacctcc 24497522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 167 - 414
Target Start/End: Original strand, 21584613 - 21584860
Alignment:
Q  167 cttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattct-ca 265  Q
    ||||| |||||||| | |||||| ||||||||||| || || ||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||| ||    
T  21584613 cttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtgtacgtaaccgcatcacgaatcacattctcca 21584712  T
Q  266 agaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaagacgacgaatcgcaggcttggtta 365  Q
    ||||| ||||| ||||| || |  || || || || || | ||| || |||||||| |||||||| |  || || |  ||||||||||| |||||||| |    
T  21584713 agaaa-atcttaagaactcctcttgtttcctcataaatcaaaccactgattctcttaacaccacctcttctcgccaatcgacgaatcgctggcttggtga 21584811  T
Q  366 tgccttggatgttatcgcgaagaacctttctgtgcctctctgctcctcc 414  Q
    | || || |||||||| |||||||| || ||||| |||| ||| |||||    
T  21584812 ttccctgaatgttatcacgaagaactttcctgtgtctctttgcacctcc 21584860  T

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Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 161 - 393
Target Start/End: Complemental strand, 41027744 - 41027512
Alignment:
Q  161 agagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacat 260  Q
    ||||||||||| || ||||| |  ||||| ||||||||||| || |||||||| || |||||||| ||||| ||||||||||||||||||||||| ||||    
T  41027744 agagtccttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacat 41027645  T
Q  261 tctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaagacgacgaatcgcaggctt 360  Q
    |||| | ||||||||| |  || || || |||||||||||||| | |||||| || | |||||| || || |  | ||| | ||||||||||||||||||    
T  41027644 tctccaaaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaacgacgaatcgcaggctt 41027545  T
Q  361 ggttatgccttggatgttatcgcgaagaacctt 393  Q
     || || ||||| |||||||| ||||| |||||    
T  41027544 cgtaattccttgaatgttatcacgaagcacctt 41027512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 327
Target Start/End: Original strand, 14261025 - 14261208
Alignment:
Q  144 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 243  Q
    |||| |||||||| || | ||||||||| || ||||| |  ||||| ||||||||||| || ||||| || |||||||| ||||| ||||| || |||||    
T  14261025 aacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaac 14261124  T
Q  244 agcatcacgaatcacattct-caagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacacc 327  Q
    |||||| |  |||||||||| ||||||| ||||| |  ||||||||||| ||||| || || |  ||||| ||||||||||||||    
T  14261125 agcatctcttatcacattctccaagaaa-atcttcaacacaccgcgagtttcttcataaatcaacccgctgattctcttcacacc 14261208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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