View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12558_low_8 (Length: 408)

Name: NF12558_low_8
Description: NF12558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12558_low_8
NF12558_low_8
[»] chr1 (10 HSPs)
chr1 (9-183)||(16522527-16522704)
chr1 (332-394)||(16522827-16522889)
chr1 (235-307)||(16522757-16522829)
chr1 (240-311)||(26977727-26977798)
chr1 (244-311)||(5671761-5671828)
chr1 (243-311)||(33101540-33101608)
chr1 (256-311)||(16050397-16050452)
chr1 (328-394)||(5671955-5672021)
chr1 (240-314)||(23280290-23280364)
chr1 (241-311)||(34273075-34273145)
[»] chr2 (5 HSPs)
chr2 (316-394)||(45257992-45258070)
chr2 (240-311)||(45714982-45715053)
chr2 (241-311)||(24499777-24499847)
chr2 (243-311)||(36267488-36267556)
chr2 (316-356)||(3586536-3586576)
[»] chr4 (6 HSPs)
chr4 (244-311)||(47253268-47253335)
chr4 (316-374)||(47253450-47253508)
chr4 (240-308)||(13171066-13171134)
chr4 (240-311)||(12683772-12683843)
chr4 (240-311)||(15514594-15514665)
chr4 (241-311)||(19809689-19809759)
[»] chr6 (9 HSPs)
chr6 (256-311)||(19730624-19730679)
chr6 (240-312)||(31295567-31295639)
chr6 (241-311)||(25008423-25008493)
chr6 (237-311)||(18147290-18147364)
chr6 (256-311)||(9403175-9403230)
chr6 (256-311)||(19305467-19305522)
chr6 (240-308)||(20148304-20148372)
chr6 (240-308)||(22184456-22184524)
chr6 (316-344)||(31423728-31423756)
[»] chr5 (4 HSPs)
chr5 (256-311)||(22903096-22903151)
chr5 (240-309)||(16621195-16621264)
chr5 (262-308)||(26994642-26994688)
chr5 (259-287)||(42204938-42204966)
[»] chr7 (9 HSPs)
chr7 (240-311)||(9135394-9135465)
chr7 (237-311)||(29373430-29373504)
chr7 (242-311)||(26762944-26763013)
chr7 (247-311)||(9573459-9573523)
chr7 (243-286)||(16363424-16363467)
chr7 (323-394)||(29373627-29373698)
chr7 (240-311)||(39879374-39879445)
chr7 (240-310)||(12644772-12644842)
chr7 (244-288)||(16363555-16363599)
[»] chr8 (8 HSPs)
chr8 (316-394)||(23497004-23497082)
chr8 (316-394)||(30477814-30477893)
chr8 (240-310)||(1909742-1909812)
chr8 (242-311)||(3459517-3459586)
chr8 (262-311)||(6928123-6928172)
chr8 (262-311)||(30477650-30477699)
chr8 (262-310)||(5859824-5859872)
chr8 (244-300)||(14666883-14666939)
[»] chr3 (6 HSPs)
chr3 (255-307)||(30606930-30606982)
chr3 (262-307)||(431353-431398)
chr3 (326-394)||(2311674-2311742)
chr3 (256-311)||(17143782-17143837)
chr3 (237-311)||(12516169-12516243)
chr3 (263-311)||(17485657-17485705)
[»] scaffold0263 (1 HSPs)
scaffold0263 (240-311)||(20530-20601)
[»] scaffold0505 (1 HSPs)
scaffold0505 (243-311)||(7875-7943)
[»] scaffold0205 (1 HSPs)
scaffold0205 (256-311)||(10948-11003)
[»] scaffold0140 (1 HSPs)
scaffold0140 (244-311)||(6289-6356)
[»] scaffold0360 (1 HSPs)
scaffold0360 (241-311)||(13910-13980)
[»] scaffold0074 (1 HSPs)
scaffold0074 (240-310)||(35240-35310)
[»] scaffold0294 (1 HSPs)
scaffold0294 (262-311)||(276-325)
[»] scaffold0174 (1 HSPs)
scaffold0174 (240-285)||(29335-29380)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 9 - 183
Target Start/End: Original strand, 16522527 - 16522704
Alignment:
Q  9 agcagagaagaagaagaccatcttttttgcacgtgtgtgttgacatctttacagtggcactgaacattt-----aattgggtgggaacatgaatgatttt 103  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||     ||||||||||||||||||||||||||    
T  16522527 agcatagaagaaga-gaccatcttttttgcacgtgtgtgttgacatctttactgtggtactgaacatttaatttaattgggtgggaacatgaatgatttt 16522625  T
Q  104 gcatgttacaattctttccctctttgattatttttctcgtcttctttgaatgccaagtgatctcttcggtgaggatggat 183  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||    
T  16522626 gcacgttacaattctttccctctttgattatttttct-gtcttctttgaatgccaagtgatctgttcgatgaggatggat 16522704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 332 - 394
Target Start/End: Original strand, 16522827 - 16522889
Alignment:
Q  332 gtgatcctcgtgccgaggcgtgcttggatgtgatgcggtgcactagagttggcatgttccttc 394  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16522827 gtgatcctcgcgccgaggcgtgcttggatgcgatgcggtgcactagagttggcatgttccttc 16522889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 16522757 - 16522829
Alignment:
Q  235 tatgaaacgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtg 307  Q
    |||| |||||||||||  |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  16522757 tatggaacgaaaggtgtctgaaggcacgttagcacttcaacgttcaagtcaataaaggaattgagaaagagtg 16522829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 311
Target Start/End: Original strand, 26977727 - 26977798
Alignment:
Q  240 aacgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    |||||||||||| || ||||| ||||||||| |||||||||||||| ||| ||||  |||||||||||||||    
T  26977727 aacgaaaggtgcctgcaggcacgttagcactccaacgctcaagtcagtaatggaaccgagaaagagtgtgta 26977798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 311
Target Start/End: Original strand, 5671761 - 5671828
Alignment:
Q  244 aaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||||| ||| ||||| ||||||||| |||||||||||| | ||| |||| ||||||||||||||||    
T  5671761 aaaggtgtttgtaggcacgttagcactccaacgctcaagttagtaatggaactgagaaagagtgtgta 5671828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 33101608 - 33101540
Alignment:
Q  243 gaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||||||| || ||||| ||||||||| |||||||||||||  ||| |||| ||||||| ||||||||    
T  33101608 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgtgta 33101540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 16050397 - 16050452
Alignment:
Q  256 aggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||| ||||||||| |||||||||||||| | | |||| ||||||||||||||||    
T  16050397 aggcacgttagcactccaacgctcaagtcattgatggaactgagaaagagtgtgta 16050452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 394
Target Start/End: Original strand, 5671955 - 5672021
Alignment:
Q  328 tagggtgatcctcgtgccgaggcgtgcttggatgtgatgcggtgcactagagttggcatgttccttc 394  Q
    |||||||||||||| |  ||| |||| ||||||||| ||| |||||||| ||||||| |||||||||    
T  5671955 tagggtgatcctcgcgtggagacgtgtttggatgtggtgcagtgcactaaagttggcgtgttccttc 5672021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 314
Target Start/End: Complemental strand, 23280364 - 23280290
Alignment:
Q  240 aacgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgtatag 314  Q
    |||||||||||| || || ||||||| ||||  ||| ||||||||| ||| |||| |||||||| ||||||||||    
T  23280364 aacgaaaggtgcctgcagacatgttatcactcaaactctcaagtcagtaatggaactgagaaagtgtgtgtatag 23280290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 311
Target Start/End: Original strand, 34273075 - 34273145
Alignment:
Q  241 acgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||||||| | || | ||| ||||||||| ||| |||||||||| ||| |||| ||||||||||||||||    
T  34273075 acgaaaggtacctgcaagcacgttagcactccaatgctcaagtcagtaacggaactgagaaagagtgtgta 34273145  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 316 - 394
Target Start/End: Complemental strand, 45258070 - 45257992
Alignment:
Q  316 agaggacacatgtagggtgatcctcgtgccgaggcgtgcttggatgtgatgcggtgcactagagttggcatgttccttc 394  Q
    |||||||||||| |||||||||||||  | ||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  45258070 agaggacacatgcagggtgatcctcgcacggaggcgtgcttggatgtgatgcggtgcactaaagtttgcatgttccttc 45257992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 311
Target Start/End: Original strand, 45714982 - 45715053
Alignment:
Q  240 aacgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    |||||||||||| || ||||| ||||||||| |||||||||||||| ||| | || ||||||||||||||||    
T  45714982 aacgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcagtaatgaaactgagaaagagtgtgta 45715053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 311
Target Start/End: Original strand, 24499777 - 24499847
Alignment:
Q  241 acgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||||||||| |  ||| | ||||||||| |||||||||||||| ||| |||| ||||||||||||||||    
T  24499777 acgaaaggtgcctctaggaacgttagcactccaacgctcaagtcagtaatggaaatgagaaagagtgtgta 24499847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 36267488 - 36267556
Alignment:
Q  243 gaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||||||| || | |||||||| |||| |||||||||||||| ||| | || ||||||||||||||||    
T  36267488 gaaaggtgcctgcatgcatgttaacactccaacgctcaagtcagtaatgaaactgagaaagagtgtgta 36267556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 3586536 - 3586576
Alignment:
Q  316 agaggacacatgtagggtgatcctcgtgccgaggcgtgctt 356  Q
    |||||||||||||||| |||||||||||| |||| ||||||    
T  3586536 agaggacacatgtaggatgatcctcgtgcggaggtgtgctt 3586576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 311
Target Start/End: Original strand, 47253268 - 47253335
Alignment:
Q  244 aaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||||||||| ||||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||    
T  47253268 aaaggtgcttgcaggcatgttagcactccaacgctcaagtcagtaatggaactgagaaagagtgtgta 47253335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 374
Target Start/End: Original strand, 47253450 - 47253508
Alignment:
Q  316 agaggacacatgtagggtgatcctcgtgccgaggcgtgcttggatgtgatgcggtgcac 374  Q
    ||||||||||||||| |||||||||| || ||||||| ||||||||||||| |||||||    
T  47253450 agaggacacatgtagagtgatcctcgcgcggaggcgtacttggatgtgatgtggtgcac 47253508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 308
Target Start/End: Original strand, 13171066 - 13171134
Alignment:
Q  240 aacgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgt 308  Q
    ||||||||||||||| ||||| ||||||||| |||| ||||||||| ||| |||| |||| ||||||||    
T  13171066 aacgaaaggtgcttgcaggcacgttagcactccaactctcaagtcagtaatggaactgagcaagagtgt 13171134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 311
Target Start/End: Original strand, 12683772 - 12683843
Alignment:
Q  240 aacgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    |||||||||||| || ||||| ||||||||| |||||||||||| | ||| | || ||||||||||||||||    
T  12683772 aacgaaaggtgcctgcaggcacgttagcactccaacgctcaagttagtaatgaaactgagaaagagtgtgta 12683843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 311
Target Start/End: Complemental strand, 15514665 - 15514594
Alignment:
Q  240 aacgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    |||||| ||||| || ||||| ||||||||| |||||||||||||| ||| |||| ||| ||||||||||||    
T  15514665 aacgaagggtgcctgtaggcacgttagcactccaacgctcaagtcagtaatggaactgaaaaagagtgtgta 15514594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 311
Target Start/End: Original strand, 19809689 - 19809759
Alignment:
Q  241 acgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||||||| | || || |||||||||||| |||||||||||||| ||| | || | ||||||||||||||    
T  19809689 acgaaaggttcctgcagacatgttagcactccaacgctcaagtcagtaatgaaactaagaaagagtgtgta 19809759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 256 - 311
Target Start/End: Complemental strand, 19730679 - 19730624
Alignment:
Q  256 aggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||    
T  19730679 aggcatgttagcactccaacgctcaagtcaataatggaactgagaaagagtgtgta 19730624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 31295639 - 31295567
Alignment:
Q  240 aacgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgtat 312  Q
    |||||||| ||| || ||||||||||||||||| |||||||||||| ||| | || |||||||||||||||||    
T  31295639 aacgaaagttgcctgcaggcatgttagcacttcgacgctcaagtcagtaatgaaactgagaaagagtgtgtat 31295567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 311
Target Start/End: Complemental strand, 25008493 - 25008423
Alignment:
Q  241 acgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||||||||| ||  |||| |||| |||| |||||||||||||| ||| |||||||||||||||||||||    
T  25008493 acgaaaggtgcatgtcggcacgttaacactccaacgctcaagtcagtaatggaattgagaaagagtgtgta 25008423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 311
Target Start/End: Original strand, 18147290 - 18147364
Alignment:
Q  237 tgaaacgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||||||||||||| || ||| | |||| |||| |||||||||||||| ||| ||||  |||||||||||||||    
T  18147290 tgaaacgaaaggtgcctgtaggaacgttaacactccaacgctcaagtcactaatggaaccgagaaagagtgtgta 18147364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 9403175 - 9403230
Alignment:
Q  256 aggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||| ||||| ||| | |||||||||||||||| |||| ||||||||||||||||    
T  9403175 aggcacgttagaactccgacgctcaagtcaataatggaactgagaaagagtgtgta 9403230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 19305467 - 19305522
Alignment:
Q  256 aggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||| |||||||||| ||||||||||||| ||| |||| |||| |||||||||||    
T  19305467 aggcacgttagcacttaaacgctcaagtcagtaatggaactgagtaagagtgtgta 19305522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 308
Target Start/End: Original strand, 20148304 - 20148372
Alignment:
Q  240 aacgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgt 308  Q
    ||||||| |||| || || || ||||||||| || ||||||||| | ||| ||||||||||||||||||    
T  20148304 aacgaaaagtgcatgcagacacgttagcactccatcgctcaagttagtaatggaattgagaaagagtgt 20148372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 308
Target Start/End: Complemental strand, 22184524 - 22184456
Alignment:
Q  240 aacgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgt 308  Q
    ||||||| |||| || || || ||||||||| || ||||||||| | ||| ||||||||||||||||||    
T  22184524 aacgaaaagtgcatgcagacacgttagcactccatcgctcaagttagtaatggaattgagaaagagtgt 22184456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 344
Target Start/End: Complemental strand, 31423756 - 31423728
Alignment:
Q  316 agaggacacatgtagggtgatcctcgtgc 344  Q
    |||||||||||||||||||||||||||||    
T  31423756 agaggacacatgtagggtgatcctcgtgc 31423728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 22903096 - 22903151
Alignment:
Q  256 aggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    |||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  22903096 aggcatgttagcacttcaacgctcaagtcagtaatggaactgagaaagagtgtgta 22903151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 309
Target Start/End: Original strand, 16621195 - 16621264
Alignment:
Q  240 aacgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtg 309  Q
    |||||||||||  || ||||| |||| |||||||||||||||| |||||  |||| ||||||||||||||    
T  16621195 aacgaaaggtgtatgtaggcacgttaacacttcaacgctcaagccaatattggaactgagaaagagtgtg 16621264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 308
Target Start/End: Complemental strand, 26994688 - 26994642
Alignment:
Q  262 gttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgt 308  Q
    ||||||||| | |||||||||||| ||| ||||||||||||||||||    
T  26994688 gttagcactccgacgctcaagtcagtaatggaattgagaaagagtgt 26994642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 287
Target Start/End: Original strand, 42204938 - 42204966
Alignment:
Q  259 catgttagcacttcaacgctcaagtcaat 287  Q
    |||||||||||||||||||||||||||||    
T  42204938 catgttagcacttcaacgctcaagtcaat 42204966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 311
Target Start/End: Complemental strand, 9135465 - 9135394
Alignment:
Q  240 aacgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    |||||||||||| |  ||||| |||||||||  ||||||||||||| ||| |||||||||||||||||||||    
T  9135465 aacgaaaggtgcatataggcacgttagcactctaacgctcaagtcagtaatggaattgagaaagagtgtgta 9135394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 311
Target Start/End: Original strand, 29373430 - 29373504
Alignment:
Q  237 tgaaacgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||||||||||||| || ||||||||||| ||| ||| |||||||||| |   | |||||||||||||||||||    
T  29373430 tgaaacgaaaggtgcatgcaggcatgttaggactccaatgctcaagtcagttgtgtaattgagaaagagtgtgta 29373504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 311
Target Start/End: Complemental strand, 26763013 - 26762944
Alignment:
Q  242 cgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    |||||||| |||| ||||| ||||||||| |||||||||||||| |||||||| | | ||| ||||||||    
T  26763013 cgaaaggttcttgcaggcacgttagcactccaacgctcaagtcagtaaaggaactcataaatagtgtgta 26762944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 9573523 - 9573459
Alignment:
Q  247 ggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||| || ||||| ||||||||| |||||| ||||||||||  |||| ||||||||||||||||    
T  9573523 ggtgcctgcaggcacgttagcactccaacgcacaagtcaatatgggaactgagaaagagtgtgta 9573459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 16363424 - 16363467
Alignment:
Q  243 gaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaa 286  Q
    ||||||||| || ||||||||||||||| |||||||||||||||    
T  16363424 gaaaggtgcatgtaggcatgttagcactccaacgctcaagtcaa 16363467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 394
Target Start/End: Original strand, 29373627 - 29373698
Alignment:
Q  323 acatgtagggtgatcctcgtgccgaggcgtgcttggatgtgatgcggtgcactagagttggcatgttccttc 394  Q
    ||||||||||||||||||| |  | | |||||||||||||| ||| |||||||| ||||||| | |||||||    
T  29373627 acatgtagggtgatcctcgcgaggggacgtgcttggatgtggtgcagtgcactaaagttggcgtattccttc 29373698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 311
Target Start/End: Original strand, 39879374 - 39879445
Alignment:
Q  240 aacgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    |||||||||||| || || || |||| ||||| ||||||||||||| ||| | || ||||||||||||||||    
T  39879374 aacgaaaggtgcctgcagacacgttaacactttaacgctcaagtcagtaatgaaactgagaaagagtgtgta 39879445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 12644772 - 12644842
Alignment:
Q  240 aacgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgt 310  Q
    |||||||||||| || ||||| ||||||||| | ||||||| |||| ||| |||| ||||||| |||||||    
T  12644772 aacgaaaggtgcatgcaggcaagttagcactccgacgctcaggtcagtaatggaactgagaaaaagtgtgt 12644842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 16363555 - 16363599
Alignment:
Q  244 aaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaata 288  Q
    |||||||| || ||||||||||||||| ||||| |||||||||||    
T  16363555 aaaggtgcatgtaggcatgttagcactccaacgatcaagtcaata 16363599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 394
Target Start/End: Complemental strand, 23497082 - 23497004
Alignment:
Q  316 agaggacacatgtagggtgatcctcgtgccgaggcgtgcttggatgtgatgcggtgcactagagttggcatgttccttc 394  Q
    |||||||||||| ||||||||||||  |   |||||||||| |||| | |||||||||||| |||||||||||||||||    
T  23497082 agaggacacatgcagggtgatcctcacgtgaaggcgtgctttgatgcggtgcggtgcactaaagttggcatgttccttc 23497004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 394
Target Start/End: Original strand, 30477814 - 30477893
Alignment:
Q  316 agaggacacatgtagggtgatcctcgtgccgaggc-gtgcttggatgtgatgcggtgcactagagttggcatgttccttc 394  Q
    |||||||||||||||||||| |||||||| | ||| ||||||| ||| |||| |||||| || ||||||  |||||||||    
T  30477814 agaggacacatgtagggtgaacctcgtgcgggggcagtgcttgtatgcgatgtggtgcattaaagttggtgtgttccttc 30477893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 310
Target Start/End: Complemental strand, 1909812 - 1909742
Alignment:
Q  240 aacgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgt 310  Q
    |||||||||||| || || || ||||||| ||||||||| |||||| ||| | || |||||||||||||||    
T  1909812 aacgaaaggtgcatgcagacacgttagcatttcaacgctaaagtcagtaatgaaactgagaaagagtgtgt 1909742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 311
Target Start/End: Complemental strand, 3459586 - 3459517
Alignment:
Q  242 cgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    |||||||||| || ||||| ||||||||| |  ||||||||||| ||| |||| |||| |||||||||||    
T  3459586 cgaaaggtgcctgcaggcacgttagcactccggcgctcaagtcagtaatggaactgagcaagagtgtgta 3459517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 6928172 - 6928123
Alignment:
Q  262 gttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||||| |||||| ||||||||| ||| |||| ||||||||||||||||    
T  6928172 gttagcatttcaacactcaagtcagtaatggaactgagaaagagtgtgta 6928123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 30477650 - 30477699
Alignment:
Q  262 gttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||||||| |||||||||||||| ||| | || ||||||||||||||||    
T  30477650 gttagcactccaacgctcaagtcagtaacgaaactgagaaagagtgtgta 30477699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 5859824 - 5859872
Alignment:
Q  262 gttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgt 310  Q
    ||||||||| |||||||||||||||||| |||| | ||||| |||||||    
T  5859824 gttagcactccaacgctcaagtcaataatggaactaagaaatagtgtgt 5859872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 14666939 - 14666883
Alignment:
Q  244 aaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgaga 300  Q
    |||||||| || ||||| ||||||||| | ||| |||||||||||| ||||||||||    
T  14666939 aaaggtgcctgcaggcacgttagcactccgacgatcaagtcaataatggaattgaga 14666883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 30606930 - 30606982
Alignment:
Q  255 aaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtg 307  Q
    |||||||||||||| | |||||||||||||| ||| |||||||||||||||||    
T  30606930 aaggcatgttagcattccaacgctcaagtcagtaatggaattgagaaagagtg 30606982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 431398 - 431353
Alignment:
Q  262 gttagcacttcaacgctcaagtcaataaaggaattgagaaagagtg 307  Q
    ||||||||||| |||||||||||||||| |||| ||||||||||||    
T  431398 gttagcacttcgacgctcaagtcaataatggaactgagaaagagtg 431353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 394
Target Start/End: Complemental strand, 2311742 - 2311674
Alignment:
Q  326 tgtagggtgatcctcgtgccgaggcgtgcttggatgtgatgcggtgcactagagttggcatgttccttc 394  Q
    ||||||||||||||||  | | ||  ||||||||||||||||||||||||| ||||||  |||||||||    
T  2311742 tgtagggtgatcctcgcacgggggtatgcttggatgtgatgcggtgcactaaagttggtgtgttccttc 2311674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 311
Target Start/End: Complemental strand, 17143837 - 17143782
Alignment:
Q  256 aggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||| ||||||||| | |||||||||||| ||| |||| ||||||||||||||||    
T  17143837 aggcacgttagcactccgacgctcaagtcagtaatggaactgagaaagagtgtgta 17143782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 311
Target Start/End: Original strand, 12516169 - 12516243
Alignment:
Q  237 tgaaacgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||||||||||||| || || || ||||||||| | |||||||||| | ||| |||| ||||||||| ||||||    
T  12516169 tgaaacgaaaggtgcctgcagacacgttagcactccgacgctcaagttagtaatggaactgagaaagattgtgta 12516243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 17485705 - 17485657
Alignment:
Q  263 ttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    |||||||  |||||||||||||| ||| ||||||||||| |||||||||    
T  17485705 ttagcaccccaacgctcaagtcagtaatggaattgagaaggagtgtgta 17485657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 311
Target Start/End: Complemental strand, 20601 - 20530
Alignment:
Q  240 aacgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||||||||||||  |  ||||||||||||   |||||||||||| |||||||| ||||||||||||||||    
T  20601 aacgaaaggtgcttacaaacatgttagcactctgacgctcaagtcactaaaggaactgagaaagagtgtgta 20530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 7875 - 7943
Alignment:
Q  243 gaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||||||| || ||||| |||||||||  ||||||||| ||| ||| | |||||||||||||||||||    
T  7875 gaaaggtgcatgtaggcacgttagcactctaacgctcaaatcagtaatgcaattgagaaagagtgtgta 7943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 311
Target Start/End: Complemental strand, 11003 - 10948
Alignment:
Q  256 aggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||| ||||||||| |||||||||||||||||| |||| ||| | ||||||||||    
T  11003 aggcacgttagcactccaacgctcaagtcaataatggaactgaaagagagtgtgta 10948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 311
Target Start/End: Original strand, 6289 - 6356
Alignment:
Q  244 aaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||||| ||| ||||| ||||||||||| | |||||||||| ||| |||| ||||||| ||||||||    
T  6289 aaaggtgtttgcaggcacgttagcacttcgaagctcaagtcagtaatggaactgagaaatagtgtgta 6356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 311
Target Start/End: Original strand, 13910 - 13980
Alignment:
Q  241 acgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||||||||| |||| ||| ||||| ||| ||| |||||||||| ||| | || ||||||||||||||||    
T  13910 acgaaaggtgcatgaatgcacgttagtactccaaagctcaagtcagtaatgaaactgagaaagagtgtgta 13980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 35240 - 35310
Alignment:
Q  240 aacgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgt 310  Q
    ||||||| ||||||| ||||| |||||||||   || ||||||||| ||| |||| |||||||||||||||    
T  35240 aacgaaatgtgcttgcaggcacgttagcactctgacactcaagtcagtaacggaactgagaaagagtgtgt 35310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 325 - 276
Alignment:
Q  262 gttagcacttcaacgctcaagtcaataaaggaattgagaaagagtgtgta 311  Q
    ||||||||| | |||||||||||| ||| |||| ||||||||||||||||    
T  325 gttagcactccgacgctcaagtcagtaatggaactgagaaagagtgtgta 276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 29380 - 29335
Alignment:
Q  240 aacgaaaggtgcttgaaggcatgttagcacttcaacgctcaagtca 285  Q
    |||||||||||| || || |||||||||||| ||||||||||||||    
T  29380 aacgaaaggtgcatggagtcatgttagcactccaacgctcaagtca 29335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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