View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12559_high_10 (Length: 336)
Name: NF12559_high_10
Description: NF12559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12559_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 43172944 - 43172743
Alignment:
| Q |
22 |
gcggagacgtcagaggaaatgaacgacaacttatacgaacaataaccacaatactaaccaaaaacgaaaacccacagaatcttcaacaattcatcccaca |
121 |
Q |
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| T |
43172944 |
gcggagacggcagaggaaaagaacgacaacttatacgtacaataaccacaatactaaccaaaaacgaaaacccacagaatcttcaacaattcatcccaca |
43172845 |
T |
|
| Q |
122 |
cttaacactcccaatcataatctcaattctttcatacaaacctcttcactctcaaccagaaaccctactttccttcttcaaatggtttcaatccaacgca |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43172844 |
cttaacactcccaatcataatctcaattctttcatacaaacctcttcactctcaaccagaaaccctactttccttcttcaaatggtttcaatccaacgca |
43172745 |
T |
|
| Q |
222 |
ca |
223 |
Q |
| |
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|| |
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| T |
43172744 |
ca |
43172743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 23 - 217
Target Start/End: Complemental strand, 51298156 - 51297956
Alignment:
| Q |
23 |
cggagacgtcagaggaaatgaacgacaacttatacgaacaataaccacaatactaac------caaaaacgaaaacccacagaatcttcaacaattcatc |
116 |
Q |
| |
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|||||||| | ||||||| |||| |||||| |||| ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||| |
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| T |
51298156 |
cggagacggcggaggaaaagaacaacaactgatacaaacaataaccacagtattaacaaaaaccaaaaacgaaaacccacagaatcttcaacaattcatt |
51298057 |
T |
|
| Q |
117 |
ccacacttaacactcccaatcataatctcaattctttcatacaaacctcttcactctcaaccagaaaccctactttccttcttcaaatggtttcaatcca |
216 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| ||| ||| |
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| T |
51298056 |
ccacacttaacactcccaatcataatctcaatcctttcatacaaacctcttcactgtcaaccaaaaaccctagtttccttcttcaaatggttccaaacca |
51297957 |
T |
|
| Q |
217 |
a |
217 |
Q |
| |
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| |
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| T |
51297956 |
a |
51297956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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