View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12559_high_20 (Length: 250)
Name: NF12559_high_20
Description: NF12559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12559_high_20 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 45555866 - 45556100
Alignment:
| Q |
16 |
ggggagacgagtggaccatgtgaaaatctccattctccacaagctaagcatctatcaagcttgatattgttttctagagtacaaaatttgcaagaccaaa |
115 |
Q |
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| T |
45555866 |
ggggagacgagtggaccatgtgaaaatctccattctccacaagctaagcatctatcaagcttgatattgttttctagagtacaaaatttgcaagaccaaa |
45555965 |
T |
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| Q |
116 |
ctttaaactttaaaacatctttttccttctttgttccacaggcttcacatagcaatagcgatggctgcaatacaccaagtcgtcatcagcaggcagtagc |
215 |
Q |
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| T |
45555966 |
ctttaaactttaaaacatctttttccttctttgttccacaggcttcacatagcaatagcaatggctgcaataaaccaagtcgtcatcagcaggcagtagc |
45556065 |
T |
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| Q |
216 |
agcaacattcaattctattcaatgaataggagtgc |
250 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
45556066 |
agcaacattcaattctattcgatgaataggagtgc |
45556100 |
T |
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