View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12559_high_22 (Length: 248)

Name: NF12559_high_22
Description: NF12559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12559_high_22
NF12559_high_22
[»] chr7 (4 HSPs)
chr7 (40-238)||(38701232-38701421)
chr7 (1-42)||(19883523-19883564)
chr7 (1-42)||(48888187-48888228)
chr7 (4-42)||(6232214-6232252)
[»] chr8 (1 HSPs)
chr8 (1-42)||(42202696-42202737)
[»] chr4 (2 HSPs)
chr4 (1-42)||(18848061-18848102)
chr4 (1-41)||(55329158-55329198)
[»] chr6 (1 HSPs)
chr6 (4-42)||(380724-380762)
[»] chr5 (2 HSPs)
chr5 (1-42)||(2756357-2756398)
chr5 (1-42)||(3678290-3678331)
[»] chr2 (2 HSPs)
chr2 (1-42)||(38971055-38971096)
chr2 (36-92)||(10239242-10239298)
[»] scaffold0691 (1 HSPs)
scaffold0691 (1-41)||(1186-1226)


Alignment Details
Target: chr7 (Bit Score: 159; Significance: 9e-85; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 40 - 238
Target Start/End: Original strand, 38701232 - 38701421
Alignment:
Q  40 ctataaataaacctctaaatatttaccctttacaaactggatggatctaagagtgcaattcttaagccaagactacaaccaaactacttttcatacaaag 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38701232 ctataaataaacctctaaatatttaccctttacaaactggatggatctaagagtgcaattcttaagctaagactacaaccaaactacttttcatacaaag 38701331  T
Q  140 tcctaaactgtcaaacggggccctacaaaacatgatcctcaatggttttgttttgtgaagggggtgttagattcgctgcagtacattcaaacttctctg 238  Q
    ||||||||         |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38701332 tcctaaac---------gggccctacaaaacatgatcctcaatggttttgttttgtgaaggggatgttagattcgctgcagtacattcaaacttctctg 38701421  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19883523 - 19883564
Alignment:
Q  1 caacaccactcgtaatagaggcacggaggactcttaagtcta 42  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  19883523 caacaccactcgtaatagaggcacggaggactctttagtcta 19883564  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 48888228 - 48888187
Alignment:
Q  1 caacaccactcgtaatagaggcacggaggactcttaagtcta 42  Q
    ||||||||||||||||||||||| ||||||||||| ||||||    
T  48888228 caacaccactcgtaatagaggcaaggaggactctttagtcta 48888187  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 6232252 - 6232214
Alignment:
Q  4 caccactcgtaatagaggcacggaggactcttaagtcta 42  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  6232252 caccactcgtaatagaggcatggaggactcctaagtcta 6232214  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42202737 - 42202696
Alignment:
Q  1 caacaccactcgtaatagaggcacggaggactcttaagtcta 42  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  42202737 caacaccactcgtaatagaggcaaggaggactcttaagtcta 42202696  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18848102 - 18848061
Alignment:
Q  1 caacaccactcgtaatagaggcacggaggactcttaagtcta 42  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  18848102 caacaccactcgtaatagaggcagggaggacttttaagtcta 18848061  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 55329198 - 55329158
Alignment:
Q  1 caacaccactcgtaatagaggcacggaggactcttaagtct 41  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  55329198 caacaccactcgtaatagaggcaaggagaactcttaagtct 55329158  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 380724 - 380762
Alignment:
Q  4 caccactcgtaatagaggcacggaggactcttaagtcta 42  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  380724 caccactcgtaatagaggcatggaggactcctaagtcta 380762  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2756357 - 2756398
Alignment:
Q  1 caacaccactcgtaatagaggcacggaggactcttaagtcta 42  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||    
T  2756357 caacaccactcgtaataaaggcacggaggcctctttagtcta 2756398  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3678290 - 3678331
Alignment:
Q  1 caacaccactcgtaatagaggcacggaggactcttaagtcta 42  Q
    |||||| ||| |||||||||||| ||||||||||||||||||    
T  3678290 caacacaacttgtaatagaggcaaggaggactcttaagtcta 3678331  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38971096 - 38971055
Alignment:
Q  1 caacaccactcgtaatagaggcacggaggactcttaagtcta 42  Q
    |||||||||||||||||||||||  ||||||| |||||||||    
T  38971096 caacaccactcgtaatagaggcaatgaggacttttaagtcta 38971055  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 10239242 - 10239298
Alignment:
Q  36 aagtctataaataaacctctaaatatttaccctttacaaactggatggatctaagag 92  Q
    |||||| |||||||| |||| |||||||||||| | ||||  |||||||||||||||    
T  10239242 aagtctctaaataaagctctcaatatttaccctgtgcaaatcggatggatctaagag 10239298  T

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Target: scaffold0691 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 1226 - 1186
Alignment:
Q  1 caacaccactcgtaatagaggcacggaggactcttaagtct 41  Q
    ||||||||||| ||| ||||||| |||||||||||||||||    
T  1226 caacaccactcataaaagaggcagggaggactcttaagtct 1186  T

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