View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12559_high_3 (Length: 614)
Name: NF12559_high_3
Description: NF12559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12559_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 47 - 604
Target Start/End: Complemental strand, 52239593 - 52239042
Alignment:
| Q |
47 |
aattaccacatccatgtggccggatatgtgtnnnnnnnnttacacttccgctgatcattgatcgaatataaactctagagtctagatatgttttgggctg |
146 |
Q |
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| T |
52239593 |
aattaccacatccatgtggccggatatgtgtaaaaaaaattacacttccgctgatcattgatcgaatataaactctagatt-------tgttttgggctg |
52239501 |
T |
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| Q |
147 |
aatactt-atgattaatttatgtgatggaacaacttgattttgttagcagcaattcctgacatttcatttgctgatattgaagataaagaggagtccttc |
245 |
Q |
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| T |
52239500 |
aatacttgatgattaaattatgtgatggaacaacttgattttgttagcagcaattcctgacatttcatttgctgatattgaagataaagaggagtccttc |
52239401 |
T |
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| Q |
246 |
catgataatttcacggtattccattgttaaattaaatatgttccgagtgttgaaatttttaccttcacgtgcttatttggataagctcctgatttggaat |
345 |
Q |
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| T |
52239400 |
catgataatttcacggtattccattgttaaattaaatatgttccgagtgttgaaatttttaccttcacgtgcttatgtggataagctcctgatttggaat |
52239301 |
T |
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| Q |
346 |
ttgcagatcgaagtattatcccaagatgagggtgatgtctcacagaaccaagaaattcaagaactccaagtaatttgcaacttacctacacatgtttcat |
445 |
Q |
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| T |
52239300 |
ttgcagatcgaagtattatcccaagatgagggtgacgtctcacagaaccaagaaattcaagaactccaagtaatttgcaacttacctacacatgtttcat |
52239201 |
T |
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| Q |
446 |
ttttatcaacttgtagaagaataacgatattgagcatatatttctgtacacgatataggtcattgacaagaagatacaacaatggtctaaaggaaaggaa |
545 |
Q |
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| T |
52239200 |
ttttatcaacttgtagaagaataacgatattgagcatatatttctgtacacgatataggtcattgacaagaagatacaacaatggtctaaaggaaaggaa |
52239101 |
T |
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| Q |
546 |
ggaaatatacgctcactgttgtcaacattacaatacgtaagaatatgtgtgtgtctgtg |
604 |
Q |
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| T |
52239100 |
ggaaatatacgctcactgttgtcaacattacaatacgtaagaatatgtgtgtgtctgtg |
52239042 |
T |
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