View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12559_high_4 (Length: 479)
Name: NF12559_high_4
Description: NF12559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12559_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 73 - 460
Target Start/End: Original strand, 15018388 - 15018775
Alignment:
| Q |
73 |
tgatagaattaatttcgttaagaataagaaaggacaaaagttgataatcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgaca |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15018388 |
tgatagaattaatttcgttaagaataagaaaggacaaaagttgataatcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgaca |
15018487 |
T |
|
| Q |
173 |
aaagtgactggctacacaaagctcaagtgttcaacccctaaaaaatcataatctataataataaatcgagattcatcagaataaagtaaggttcatgttg |
272 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15018488 |
acagtgactggctacacaaagctcaagtgttcaacccctaaaaaatcataatctataataataaatcgagattcatcagaataaagtaaggttcatgtta |
15018587 |
T |
|
| Q |
273 |
cggctcaacaatcggacagaaagaattgagatccatgctgtgattcatgtcaaattagatacacgcaatttgcataggttaggttcatttttgtttcaaa |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15018588 |
cggctcaacaatcggacagaaagaattgagatccatgctgtgattcatatcaaattagatacgcgcaatttgcataggttaggttcatttttgtttcaaa |
15018687 |
T |
|
| Q |
373 |
ccgagatacgactagaatgtattgtaaaatatttataaacaaggttatgatgatagatcagataatctagtactagtgctgtcaaaat |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15018688 |
ccgagatacgactagaatgtattgtaaaatatttataaacaaggttatgatgatagatcagataatctagtactagtgctgtcaaaat |
15018775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 73 - 460
Target Start/End: Original strand, 15025506 - 15025893
Alignment:
| Q |
73 |
tgatagaattaatttcgttaagaataagaaaggacaaaagttgataatcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgaca |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15025506 |
tgatagaattaatttcgttaagaataagaaaggacaaaagttgataatcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgaca |
15025605 |
T |
|
| Q |
173 |
aaagtgactggctacacaaagctcaagtgttcaacccctaaaaaatcataatctataataataaatcgagattcatcagaataaagtaaggttcatgttg |
272 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15025606 |
acagtgactggctacacaaagctcaagtgttcaacccctaaaaaatcataatctataataataaatcgagattcatcagaataaagtaaggttcatgtta |
15025705 |
T |
|
| Q |
273 |
cggctcaacaatcggacagaaagaattgagatccatgctgtgattcatgtcaaattagatacacgcaatttgcataggttaggttcatttttgtttcaaa |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15025706 |
cggctcaacaatcggacagaaagaattgagatccatgctgtgattcatatcaaattagatacgcgcaatttgcataggttaggttcatttttgtttcaaa |
15025805 |
T |
|
| Q |
373 |
ccgagatacgactagaatgtattgtaaaatatttataaacaaggttatgatgatagatcagataatctagtactagtgctgtcaaaat |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15025806 |
ccgagatacgactagaatgtattgtaaaatatttataaacaaggttatgatgatagatcagataatctagtactagtgctgtcaaaat |
15025893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 110 - 460
Target Start/End: Original strand, 15043669 - 15044014
Alignment:
| Q |
110 |
aagttgata-atcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgacaaaagtgactggctacacaaagctcaagtgttcaacc |
208 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15043669 |
aagttgatatatcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgacaaaagtgactggctacacaaagctcaagtgttcaacc |
15043768 |
T |
|
| Q |
209 |
cctaaaaaatcataatctataataataaatcgagattcatcagaataaagtaaggttcatgttgcggctcaacaatcggacagaaagaattgagatccat |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15043769 |
cctaaaaaatcataatctataataataaatcgagattcatcagaataaattaaggttcatgttgcggctcaaaaatcggacagaaagaattgagatccac |
15043868 |
T |
|
| Q |
309 |
gctgtgattcatgtcaaattagatacacgcaatttgcataggttaggttcatttttgtttcaaaccgagatacgactagaatgtattgtaaaatatttat |
408 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15043869 |
gctgtgattcatgtcaaattagatacaagcaattttcataggttaggttca-ttttgtttcaaaccgagatacgactagaatgtattgtaaaatatttat |
15043967 |
T |
|
| Q |
409 |
aaacaaggttatgatgatagatcagataatctagtactagtgctgtcaaaat |
460 |
Q |
| |
|
||||| || | |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15043968 |
aaacatggctgtgatga-----cagataatctagtactagtgctgtcaaaat |
15044014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 117 - 248
Target Start/End: Original strand, 15003929 - 15004060
Alignment:
| Q |
117 |
taatcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgacaaaagtgactggctacacaaagctcaagtgttcaacccctaaaaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
15003929 |
taatcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgacaacagtgaccggctacactgcgctcaagtgttcaacccctaaaaa |
15004028 |
T |
|
| Q |
217 |
atcataatctataataataaatcgagattcat |
248 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| |
|
|
| T |
15004029 |
atcataatctgtaataataaattgagattcat |
15004060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 335
Target Start/End: Original strand, 15004056 - 15004127
Alignment:
| Q |
264 |
ttcatgttgcggctcaacaatcggacagaaagaattgagatccatgctgtgattcatgtcaaattagataca |
335 |
Q |
| |
|
|||||||||| | ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15004056 |
ttcatgttgcagttcaacaatcaaacagaaagaattgagatccatgctgctattcatgtcaaattagataca |
15004127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 425
Target Start/End: Original strand, 15004121 - 15004170
Alignment:
| Q |
376 |
agatacgactagaatgtattgtaaaatatttataaacaaggttatgatga |
425 |
Q |
| |
|
|||||| || |||||||| ||||||||||||||||||| |||| |||||| |
|
|
| T |
15004121 |
agatacaaccagaatgtactgtaaaatatttataaacatggttgtgatga |
15004170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University