View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12559_high_5 (Length: 458)
Name: NF12559_high_5
Description: NF12559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12559_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 6664000 - 6663573
Alignment:
| Q |
18 |
catgccagatacaaggtactttaactttttggttacatttgttactaacatacattagtcctatatataaggacnnnnnnn-aatttgattatgttttta |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||| |
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| T |
6664000 |
catgccagatacaaggtactttaactttttggttacatttgttactaacacacattaatcctatatataaggacttttttttaatttgattatgttttta |
6663901 |
T |
|
| Q |
117 |
acatagtaaaatgatatatatgttttgtaggataattggtacactcaaagaagaaataggaaaatctcatcaaattagagaaaaagaatgtatatgtgac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6663900 |
acatagtaaaatgatatatatgttttgtaggataattggtacactca--gaagaaataggaaaatctcatcaaattagagaaaaagaatgtatatgtgac |
6663803 |
T |
|
| Q |
217 |
gtagtctatttgaaggatacagggaataaagctcataatgagtttgcacttcctctagatgtggctgaagtgattgcaaaacatcttaacgatgtgcttg |
316 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6663802 |
gtagtctatttgaaggatgcagggaataaagctcataatgagtttgcacttcctctagatgtggctgaagtgattgcaaaacatcttaacgatgtgcttg |
6663703 |
T |
|
| Q |
317 |
attatttgcattttcgagcttgcaataaactccttcgtctagccgccccaccgattcaatggagatcatcttcttgcatgtctatgtcaaggtttgatca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6663702 |
attatttgcattttcgagcttgcaataaactccttcgtctagccgccccaccgattcaatggagatcatcttcttgcatgtcaatgtcaaggtttgatca |
6663603 |
T |
|
| Q |
417 |
tctttcaatgcgtcctttatttgtgttctc |
446 |
Q |
| |
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|||||||||| ||||||||||||||||||| |
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| T |
6663602 |
tctttcaatgtgtcctttatttgtgttctc |
6663573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 13243880 - 13244309
Alignment:
| Q |
18 |
catgccagatacaaggtactttaactttttggttacatttgttactaacatacattagtcctatatataaggacnnnnnnnaatttgattatgtttttaa |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
13243880 |
catgccagagacaaggtactttaactttttgattacatttgttacaaacatacgttagtcctatatataaggactttttttaatttgattatgtttttaa |
13243979 |
T |
|
| Q |
118 |
catagtaaaatgatatatatgttttgtaggataattggtacactcaaagaagaaataggaaaatctcatcaaattagagaaaaagaat-gtatatgtgac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| | ||||| || ||||||||||| |
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| T |
13243980 |
catagtaaaatgatatatatgttttgtaggataattggtactctcaaagaagaaacaggaaaatctcatcaaattaaaaaaaaaaaaaagtatatgtgac |
13244079 |
T |
|
| Q |
217 |
gtagtctatttgaaggatacagggaataaagctcataatgagtttgcacttcctctagatgtggctgaagtgattgcaaaacatcttaacgatgtgcttg |
316 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
13244080 |
gtagtctatttgaaggatgcaggaaataaagttcataatgagcttgcacttcctctagatgtggctgaagtgattgcaaaacatcttaatgatgtgcttg |
13244179 |
T |
|
| Q |
317 |
attatttgcattttcgagcttgcaataaactccttcgtctagccgccccaccgattcaatggagatcatcttcttgcatgtctatgtcaaggtttgatca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||| |
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|
| T |
13244180 |
attatttgcattttcgagcttgcaataaactccttcgtctggccgccccaccgattcaatggagatcatcttcttccatgtcaatgtcgtggtttgatca |
13244279 |
T |
|
| Q |
417 |
tctttcaatgcgtcctttatttgtgttctc |
446 |
Q |
| |
|
|||||| || ||||||||||||||||||| |
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|
| T |
13244280 |
tctttcgatatgtcctttatttgtgttctc |
13244309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 99 - 443
Target Start/End: Original strand, 6681605 - 6681947
Alignment:
| Q |
99 |
aatttgattatgtttttaacatagtaaaatgatatatatgttttgtaggataattggtacactcaaagaagaaataggaaaatctcatcaaattagagaa |
198 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||||| | | |||||||||||||||||| |||||| ||| ||||| ||||||| |
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|
| T |
6681605 |
aatttgattatgtttttaacatagtgaagtgatatatatgttttgtaggatgactagtacactcaaagaagaaacgggaaaagctcgtcaaactagagaa |
6681704 |
T |
|
| Q |
199 |
aaagaatgtatatgtgacgtagtctatttgaaggatacagggaataaagctcataatgagtttgcacttcctctagatgtggctgaagtgattgcaaaac |
298 |
Q |
| |
|
|||||| || | |||| | |||| | | |||||| ||||| ||||||||||| || | ||| | |||||||||||||| |||||| |||||||||| |
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|
| T |
6681705 |
aaagaaagtgt--gtgatgcagtcaagtcaaaggatgcaggggataaagctcatgatcaattttcctttcctctagatgtgtttgaagtaattgcaaaac |
6681802 |
T |
|
| Q |
299 |
atcttaacgatgtgcttgattatttgcattttcgagcttgcaataaactccttcgtctagccgccccaccgattcaatggagatcatcttcttgcatgtc |
398 |
Q |
| |
|
|| |||| ||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||||||| ||||| |
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|
| T |
6681803 |
atattaatgatgttcttgcttatttgcattttcgagctagcaataaactccttcgtctagccgcaccatcaattcaatggagatcatcttcttcaatgtc |
6681902 |
T |
|
| Q |
399 |
tatgtcaaggtttgatcatctttcaatgcgtcctttatttgtgtt |
443 |
Q |
| |
|
|| ||| ||||||| |||| |||||| |||| |||||||||| |
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|
| T |
6681903 |
aatatcacagtttgatgatctctcaatgtctcctctatttgtgtt |
6681947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 166 - 446
Target Start/End: Complemental strand, 6655738 - 6655461
Alignment:
| Q |
166 |
gaagaaataggaaaatctcatcaaattagagaaaaagaatgtatatgtgacgtagtctatttgaaggatacagggaataaagctcataatgagtttgcac |
265 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||| ||| |||||| | ||||||||| |||||| ||| | |||||||||||||| | ||| | | |
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|
| T |
6655738 |
gaagaaataggaaaatcttgtgaaattagagaaaaagaaagtacatgtgatgcagtctatttaaaggatgcagaggataaagctcataatcaattttccc |
6655639 |
T |
|
| Q |
266 |
ttcctctagatgtggctgaagtgattgcaaaacatcttaacgatgtgcttgattatttgcattttcgagcttgcaataaactccttcgtctagccgcccc |
365 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||| |||| ||||| |||| ||||||||||||||||||| ||||||||||| |||||||||| || |
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|
| T |
6655638 |
ttcctctagatgtgtttgaagtaattgcaaaacatattaatgatgttcttgcttatttgcattttcgagctagcaataaactc--aggtctagccgcacc |
6655541 |
T |
|
| Q |
366 |
accgattcaatggagatcatcttcttgcatgtctatgtcaaggtttgatcatctttcaatgcgtcctttatttgtgttctc |
446 |
Q |
| |
|
||| |||||||||||||||||||||| |||||| |||||||||||||| ||||||||||| |||| |||||||| ||||| |
|
|
| T |
6655540 |
accaattcaatggagatcatcttcttccatgtcaatgtcaaggtttgacgatctttcaatgtgtcc-ttatttgtcttctc |
6655461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 243 - 446
Target Start/End: Original strand, 6653506 - 6653709
Alignment:
| Q |
243 |
taaagctcataatgagtttgcacttcctctagatgtggctgaagtgattgcaaaacatcttaacgatgtgcttgattatttgcattttcgagcttgcaat |
342 |
Q |
| |
|
|||||||||| |||| | |||| |||||||||| |||| |||||||||||| |||| ||||| | ||||| ||||||||||||||||||||||| |||| |
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|
| T |
6653506 |
taaagctcatgatgaatctgcatttcctctagacgtggttgaagtgattgccaaacgtcttagcaatgtggttgattatttgcattttcgagctgccaat |
6653605 |
T |
|
| Q |
343 |
aaactccttcgtctagccgccccaccgattcaatggagatcatcttcttgcatgtctatgtcaaggtttgatcatctttcaatgcgtcctttatttgtgt |
442 |
Q |
| |
|
|||||| ||||| |||||||||||| |||||||||||||||||||||| |||||| |||||| | |||||| |||| |||||| |||| ||||||||| |
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|
| T |
6653606 |
aaactctttcgtgcagccgccccaccaattcaatggagatcatcttcttccatgtccatgtcacgatttgatgatctctcaatgtctcctctatttgtgt |
6653705 |
T |
|
| Q |
443 |
tctc |
446 |
Q |
| |
|
|||| |
|
|
| T |
6653706 |
tctc |
6653709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 262 - 426
Target Start/End: Complemental strand, 13246269 - 13246105
Alignment:
| Q |
262 |
gcacttcctctagatgtggctgaagtgattgcaaaacatcttaacgatgtgcttgattatttgcattttcgagcttgcaataaactccttcgtctagccg |
361 |
Q |
| |
|
||||| |||||||| || | |||||||||||| |||||||||||| ||||| ||||||||||||||||||| |||| |||||||||| |||||||||| | |
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|
| T |
13246269 |
gcactgcctctagacgtagttgaagtgattgccaaacatcttaacaatgtgattgattatttgcattttcgggcttccaataaactctttcgtctagctg |
13246170 |
T |
|
| Q |
362 |
ccccaccgattcaatggagatcatcttcttgcatgtctatgtcaaggtttgatcatctttcaatg |
426 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||| |||||| | |||||| |||| |||||| |
|
|
| T |
13246169 |
ccccaccaattcaatggagatcatcttcttccatgtcaatgtcacgatttgatgatctctcaatg |
13246105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 6655863 - 6655740
Alignment:
| Q |
99 |
aatttgattatgtttttaacatagtaaaatgatatat-------atgttttgtaggataattggtacactcaaagaagaaataggaaaatctcatcaaat |
191 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
6655863 |
aatttgattatgtttttaatatagtaaaatgatatattatatatatgttttgtaggataattggtacgctcaaagaagaaataggaaaatctcatgaaat |
6655764 |
T |
|
| Q |
192 |
tagagaaaaagaatgtatatgtga |
215 |
Q |
| |
|
|| |||||||||| ||| |||||| |
|
|
| T |
6655763 |
tatagaaaaagaaagtacatgtga |
6655740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 13246380 - 13246309
Alignment:
| Q |
133 |
tatatgttttgtaggataattggtacactcaaagaagaaataggaaaatctcatcaaattagagaaaaagaa |
204 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| | ||||||| ||||||| | ||||||||||||| |
|
|
| T |
13246380 |
tatatgttttgtaggatgattggtacactcaaagaagacacaggaaaaactcatcataatagagaaaaagaa |
13246309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 6655902 - 6655873
Alignment:
| Q |
18 |
catgccagatacaaggtactttaacttttt |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6655902 |
catgccagatacaaggtactttaacttttt |
6655873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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