View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12559_high_6 (Length: 437)
Name: NF12559_high_6
Description: NF12559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12559_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 15 - 420
Target Start/End: Complemental strand, 4103643 - 4103238
Alignment:
| Q |
15 |
aacaaagaagaatccccagttacaaacaaacttgaggagcaaccacctttcatccctcagacacaaaatagctatggcttatatggccatgactctgatc |
114 |
Q |
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| T |
4103643 |
aacaaagaagaatccccagttacaaacaaacctgaggagcaaccacctttcatccctcagacacaaaatagctatggcttatatggccatgactctgatc |
4103544 |
T |
|
| Q |
115 |
acattccttccaccgccgccacgacatccaccaccaattctaactttgaagagacaagcaattaccccaacaaaaacaagtactacaacaatgatgcata |
214 |
Q |
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| T |
4103543 |
acattccttccaccgccgccacgacatccaccaccaattctaactttgaagagacaagcaattaccccaacaataacaagtactacaacaatgatgcata |
4103444 |
T |
|
| Q |
215 |
taacacaaagtattacaacaaagacacttttggaaataaccaaaatgagttgagtgacacaaaatacaatgaagaaggttacaactccatgatggaaaaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4103443 |
taacacaaagtattacaacaaagacacttttggaaataaccaaaatgagttgagtgacacaaaatacaatgaagaaggttacaactccatgatggaaaaa |
4103344 |
T |
|
| Q |
315 |
caaaacaacaaccaagagtattacttcaacaacaacaatgctgcaaatgaaagatcattccacaacaataattataataattataatgctcagaataaca |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4103343 |
caaaacaacaaccaagagtattacttcaacaacaacaatgctgcaaatgaaagatcattccacagcaataattataataattataatgctcagaataaca |
4103244 |
T |
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| Q |
415 |
ggtaca |
420 |
Q |
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|||||| |
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| T |
4103243 |
ggtaca |
4103238 |
T |
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