View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12559_low_1 (Length: 697)
Name: NF12559_low_1
Description: NF12559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12559_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 614; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 19 - 680
Target Start/End: Original strand, 26099003 - 26099664
Alignment:
| Q |
19 |
taattcactattcatatgttacgtacattacatacatgcacactctttttatatcaatagttaaaaaataacgaacctgagtctaacatgccgattacaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099003 |
taattcactattcatatgttacgtacattacatacatgcatactctttttatatcaatagttaaaaaataacgaacctgagtctaacatgccgattacaa |
26099102 |
T |
|
| Q |
119 |
tgtccgatgatgacggtgtggaactagagagtgtgttgtcaatttcgacataagtttgcgaattgagaaaatcccaagaacgtgttgtgtgaagctttag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099103 |
tgtccgatgatgacggtgtggaactagagagtgtgttgtcaatttcgacataagtttgcgaattgagaaaatcccaagaacgtgttgtgtgaagctttag |
26099202 |
T |
|
| Q |
219 |
gatgggatccagaaacacagatacaactccaggttgttgagcaattgaatttgcttcattttttgataaacgagctgcgaagcctgagaatccgtatttg |
318 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099203 |
gatgggatccagaaacacagacacaactccaggttgttgagcaattgaatttgcttcattttttgataaacgagctgcgaagcctgagaatccgtatttg |
26099302 |
T |
|
| Q |
319 |
tagttgtgtactagagctttttcattcctaaaccattcacatcaataattgaatatcatgatatttgtgtttgtgtttgtgtaattagtgttaattaatt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099303 |
tagttgtgtactagagctttttcattcctaaaccattcacatcaataattgaatatcatgatatttgtgtttgtgtttgtgtaattagtgttaattaatt |
26099402 |
T |
|
| Q |
419 |
aattaccttcttaacaccatgtttaaaacatgatcatgatctttacgaagggtaccattagttgaatccgtacctcccatgtacacaatataaacttgat |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
26099403 |
aattaccttcttaacaccatgtttaaaacatgatcatgatctttacgaagggaaccattagttgaatccacacctcccatgtacacaatataaacttgat |
26099502 |
T |
|
| Q |
519 |
tatcattccctggttgagtagctaaagataattttaactctccaagaaggaagagagagtaaaatgttagtatcaagaaaattggatttcttttcatgtt |
618 |
Q |
| |
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| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26099503 |
tttcattctttggttgagtagctaaagatgattttaactctccaagaaggaagagagagtaaaatgttagtatcaagaaaattggatttcttttcatgtt |
26099602 |
T |
|
| Q |
619 |
tagcattcttttgatgagtatgcttgttagctcccacgcccacacatttatataagaagcca |
680 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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|
| T |
26099603 |
tagcattctttagatgagtatgcttgttagctcccacgctcacaaatttatataagaagcca |
26099664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 93 - 357
Target Start/End: Original strand, 53434137 - 53434401
Alignment:
| Q |
93 |
acctgagtctaacatgccgattacaatgtccgatgatgacggtgtggaactagagagtgtgttgtcaatttcgacataagtttgcgaattgagaaaatcc |
192 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| | || ||| | ||||||| |||| | ||||| ||| ||||||| | | |||||||||| |
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|
| T |
53434137 |
acctgagtctaacatgccgattacaacgtttgatgatgaagaagtagaattgaagagtgtattgttagtttcggcattagtttgcaagtcgagaaaatcc |
53434236 |
T |
|
| Q |
193 |
caagaacgtgttgtgtgaagctttaggatgggatccagaaacacagatacaactccaggttgttgagcaattgaatttgcttcattttttgataaacgag |
292 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||| | ||||| |||||||||||||||| || | |
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|
| T |
53434237 |
caagaacgtgttgtgtaaagctttaggatgggatccggaaacacagacacaactccaggttgttgagcaactaaatttacttcattttttgataagcggg |
53434336 |
T |
|
| Q |
293 |
ctgcgaagcctgagaatccgtatttgtagttgtgtactagagctttttcattcctaaaccattca |
357 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53434337 |
ctgcgaagcctgagaatccgtatttatagttgtgtactagagctttttcattcctaaaccattca |
53434401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 69 - 363
Target Start/End: Complemental strand, 48371130 - 48370830
Alignment:
| Q |
69 |
atatcaatagttaaaaaataacgaacctgagtctaacatgccgattacaatgtccgatgatgacggt------gtggaactagagagtgtgttgtcaatt |
162 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||| | | | ||| | ||||| ||| |||| ||| |
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|
| T |
48371130 |
atatcaatactttaaaaataacgaacctgagtctaacatgccgattacgatgtccgacgatgaagattgagaagaagaattggagagagtgctgtcgatt |
48371031 |
T |
|
| Q |
163 |
tcgacataagtttgcgaattgagaaaatcccaagaacgtgttgtgtgaagctttaggatgggatccagaaacacagatacaactccaggttgttgagcaa |
262 |
Q |
| |
|
| ||||| ||||||| | ||||| |||||||||||| | |||||||||||||| || |||||||| |||||||||| |||||||||||||||||||||| |
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|
| T |
48371030 |
ttgacatgagtttgcaacttgaggaaatcccaagaatgagttgtgtgaagcttcagaatgggatctggaaacacagacacaactccaggttgttgagcaa |
48370931 |
T |
|
| Q |
263 |
ttgaatttgcttcattttttgataaacgagctgcgaagcctgagaatccgtatttgtagttgtgtactagagctttttcattcctaaaccattcacatca |
362 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48370930 |
ttgaggctgcttcatttttcgataaacgagctgcgaagcctgagaatccgtgcttatagttatgtactagagctttttcattcctaaacaattcacatca |
48370831 |
T |
|
| Q |
363 |
a |
363 |
Q |
| |
|
| |
|
|
| T |
48370830 |
a |
48370830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 187 - 362
Target Start/End: Original strand, 53426070 - 53426245
Alignment:
| Q |
187 |
aaatcccaagaacgtgttgtgtgaagctttaggatgggatccagaaacacagatacaactccaggttgttgagcaattgaatttgcttcattttttgata |
286 |
Q |
| |
|
|||||||||||||||||||| || ||||| || |||||||| | || ||||| |||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
53426070 |
aaatcccaagaacgtgttgtatggagcttcagaatgggatcagggaagacagacacaactccaggttgttgagcaattgagtttgcttcactttttgata |
53426169 |
T |
|
| Q |
287 |
aacgagctgcgaagcctgagaatccgtatttgtagttgtgtactagagctttttcattcctaaaccattcacatca |
362 |
Q |
| |
|
||||||| || |||||||||||||||| ||||||||| |||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
53426170 |
aacgagccgcaaagcctgagaatccgtgtttgtagttatgtactagagctttctcattcctaaatgattcacatca |
53426245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 181 - 362
Target Start/End: Original strand, 53321762 - 53321943
Alignment:
| Q |
181 |
ttgagaaaatcccaagaacgtgttgtgtgaagctttaggatgggatccagaaacacagatacaactccaggttgttgagcaattgaatttgcttcatttt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||| || || ||||||| || ||||||| || |||||||||||||||||||| ||||| |||||||||| || |
|
|
| T |
53321762 |
ttgagaaaatcccaagaacgtgttgtgtggagtttcaggatggaattgggaaacacggacacaactccaggttgttgagctattgagtttgcttcatgtt |
53321861 |
T |
|
| Q |
281 |
ttgataaacgagctgcgaagcctgagaatccgtatttgtagttgtgtactagagctttttcattcctaaaccattcacatca |
362 |
Q |
| |
|
|||||| | ||||||| || ||||||||||| | |||||||||||||| || ||| | || |||||||| |||||||||| |
|
|
| T |
53321862 |
ttgatagaagagctgcaaaacctgagaatccatgtttgtagttgtgtattaaagccctctcgttcctaaataattcacatca |
53321943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 411 - 627
Target Start/End: Original strand, 53426306 - 53426525
Alignment:
| Q |
411 |
aattaattaattaccttcttaacaccatgtttaaaacatgatcatgatctttacgaagggtaccattagttgaatccgtacctcccatgtacacaatata |
510 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||||||| ||| ||||||||| ||||||| |||||||||||||| | | ||||||| ||||||||||| |
|
|
| T |
53426306 |
aattaattaagtacctttttaacactgtgtttaaaatatgggcatgatcttcgcgaagggaaccattagttgaatgtgaagctcccatatacacaatata |
53426405 |
T |
|
| Q |
511 |
aacttgattatcattccctggttgagtagctaaagataattttaactctccaag---aaggaagagagagtaaaatgttagtatcaagaaaattggattt |
607 |
Q |
| |
|
||||||||| |||||| ||| ||||| || ||| ||| || || |||||||||| ||||||||| ||||||||| |||||| ||| | || || |||| |
|
|
| T |
53426406 |
aacttgattgtcattctctgattgaggagttaaggatgatcttgactctccaaggaaaaggaagagtgagtaaaatattagtaccaatagaactgaattt |
53426505 |
T |
|
| Q |
608 |
cttttcatgtttagcattct |
627 |
Q |
| |
|
| |||||||||||| ||||| |
|
|
| T |
53426506 |
cctttcatgtttagtattct |
53426525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 416 - 620
Target Start/End: Original strand, 53434471 - 53434678
Alignment:
| Q |
416 |
attaattaccttcttaacaccatgtttaaaacatgatcatgatctttacgaagggtaccattagttgaatccgtacctcccatgtacacaatataaactt |
515 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| |||||||||||||||||| ||||| ||||||||||| ||||||| ||||||||||||| || |
|
|
| T |
53434471 |
attaattaccttcttaacactgtgcttaaaacataggcatgatctttacgaagggaaccatctattgaatccgtagctcccatatacacaatataaattt |
53434570 |
T |
|
| Q |
516 |
gattatcattccctggttgagtagctaaagataattttaactctcc---aagaaggaagagagagtaaaatgttagtatcaagaaaattggatttctttt |
612 |
Q |
| |
|
|||| |||||| || || | ||||||| || | || ||||||| |||||||||||| |||||||| || |||||| ||||||||||||| ||| |
|
|
| T |
53434571 |
gattttcattctttgatttattagctaagtatgaccttgactctccaagaagaaggaagagtgagtaaaacactaatatcaataaaattggatttccttt |
53434670 |
T |
|
| Q |
613 |
catgttta |
620 |
Q |
| |
|
|||||||| |
|
|
| T |
53434671 |
catgttta |
53434678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 145 - 347
Target Start/End: Original strand, 53310789 - 53310978
Alignment:
| Q |
145 |
gagagtgtgttgtcaatttcgacataagtttgcgaattgagaaaatcccaagaacgtgttgtgtgaagctttaggatgggatccagaaacacagatacaa |
244 |
Q |
| |
|
|||| |||||| ||||||| | | ||||||||| | ||| |||||||||||||||||||| ||||||||||| |||||||| || || |||| |||| |
|
|
| T |
53310789 |
gagaatgtgttttcaattttggcgtaagtttgcatttcgaggaaatcccaagaacgtgttgtatgaagctttagaatgggatcgaggaagacagccacaa |
53310888 |
T |
|
| Q |
245 |
ctccaggttgttgagcaattgaatttgcttcattttttgataaacgagctgcgaagcctgagaatccgtatttgtagttgtgtactagagctttttcatt |
344 |
Q |
| |
|
||||| |||| ||||||||||| ||||||||||||||| |||| ||||||||||||| |||||| |||||||| ||||| |||||||| |
|
|
| T |
53310889 |
ctccatgttgatgagcaattgagtttgcttcattttttaataa-------------cctgagaatccgtgtttgtaattgtgtacgagagccttttcatt |
53310975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 409 - 526
Target Start/End: Original strand, 53311063 - 53311184
Alignment:
| Q |
409 |
ttaattaattaattaccttcttaacaccatgtttaaaacatg---atc-atgatctttacgaagggtaccattagttgaatccgtacctcccatgtacac |
504 |
Q |
| |
|
||||||| ||| ||| |||||||||||| ||||||||||||| || ||||| ||| ||||||||| |||||||||||| | | ||||||||||||| |
|
|
| T |
53311063 |
ttaattagttagttaacttcttaacaccgtgtttaaaacatggatatatatgatattttggaagggtactattagttgaatctgcagctcccatgtacac |
53311162 |
T |
|
| Q |
505 |
aatataaacttgattatcattc |
526 |
Q |
| |
|
|||||||||||| || |||||| |
|
|
| T |
53311163 |
aatataaacttgtttgtcattc |
53311184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 629 - 680
Target Start/End: Original strand, 53434734 - 53434785
Alignment:
| Q |
629 |
ttgatgagtatgcttgttagctcccacgcccacacatttatataagaagcca |
680 |
Q |
| |
|
||||||||||||||| ||||||||| | | |||||||||||||||||||||| |
|
|
| T |
53434734 |
ttgatgagtatgcttattagctccccctcgcacacatttatataagaagcca |
53434785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 635 - 680
Target Start/End: Complemental strand, 48370576 - 48370531
Alignment:
| Q |
635 |
agtatgcttgttagctcccacgcccacacatttatataagaagcca |
680 |
Q |
| |
|
||||||||||||||||||| | | ||||||||||||||| |||||| |
|
|
| T |
48370576 |
agtatgcttgttagctcccgccctcacacatttatataaaaagcca |
48370531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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