View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12559_low_11 (Length: 419)
Name: NF12559_low_11
Description: NF12559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12559_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 46 - 411
Target Start/End: Complemental strand, 42144075 - 42143710
Alignment:
| Q |
46 |
aatttttagtatttcaaaattacagctatataagatatccttttaacttggttttcctttcgggtgtgaaatcaataacttagactgagcatagtgaagg |
145 |
Q |
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| T |
42144075 |
aatttttagtatttcaaaattacagctatataagatatccttttaacttggttttcctttcgggtgtgaaatcaataacttagactgagcatagtgaagg |
42143976 |
T |
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| Q |
146 |
attttgtctcattcgtgaattgtttgataattgatgatactaagctcggactttgtattgctaaactttgacacaccttctgtttannnnnnnnnnnnnn |
245 |
Q |
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| T |
42143975 |
attttgtctcattcgtgaattgtttgataactgatgatactaagcttggactttgtattgctaaactttgacacaccttctgtttattttttattttttt |
42143876 |
T |
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| Q |
246 |
ggcaaaccaatgtatcctcttgcgcaagtatgtaccttagattcttaagatatctgagatttatttaagggtttgacctcttctaaaatannnnnnnnat |
345 |
Q |
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| T |
42143875 |
ggcaaaccaatgtatcctcttgcgcaagtatgtaccttagattcttaagatatctcagatttatttaagggtttgacctcttctaaaatattttttttat |
42143776 |
T |
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| Q |
346 |
tcacagtagtcagggtcaaacctctgaccaaataattaacgagcccgagtatctatgatctctgct |
411 |
Q |
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||||||||||||||| |||||||| |||||||| |||||||||||| |||||||||||||| |||| |
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| T |
42143775 |
tcacagtagtcagggccaaacctcggaccaaatgattaacgagcccaagtatctatgatctgtgct |
42143710 |
T |
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