View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12559_low_13 (Length: 390)

Name: NF12559_low_13
Description: NF12559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12559_low_13
NF12559_low_13
[»] chr8 (3 HSPs)
chr8 (14-378)||(31338431-31338795)
chr8 (14-378)||(4862888-4863252)
chr8 (16-238)||(40274054-40274281)
[»] chr1 (4 HSPs)
chr1 (24-302)||(19327558-19327836)
chr1 (11-295)||(45030962-45031246)
chr1 (11-295)||(45026114-45026398)
chr1 (11-295)||(24206332-24206616)
[»] scaffold0009 (1 HSPs)
scaffold0009 (11-291)||(28237-28517)
[»] scaffold0134 (1 HSPs)
scaffold0134 (22-287)||(20892-21157)
[»] chr6 (2 HSPs)
chr6 (16-311)||(16590945-16591236)
chr6 (51-295)||(33162350-33162594)


Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 378
Target Start/End: Complemental strand, 31338795 - 31338431
Alignment:
Q  14 agatcagctgaaggaccatacgatgattcttgacagaagagccgacatttctctactaatcagagtgcatcttaaggcgttgacaataagtagagacatt 113  Q
    |||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||    
T  31338795 agatcagctgaaggaccatatgattattcttgacagaacagccgacatttctctacttatcagagtgcatcttaaggagttgacaataagcagagacatt 31338696  T
Q  114 gggaaaatcctccattagagtgttagagaattcttgcttaagagtgacaacccgagcattttggttgtcctgaaaaatgtcagtcaaacgattccatgtt 213  Q
    ||||||||| |||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31338695 gggaaaatcatccattcgagtgttagagaattcttgctcaagagtgacagcccgagcattttggttgtcctgaaaaatgtcagtcaaacgattccatgtt 31338596  T
Q  214 tccacagcagtggagtctggttccaagatggtggtcagaaggtcagtggagattgtagaatatatccactgaaggacggtggagtcaagggtggtccact 313  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31338595 tccacagcagtggagtttggttccaggatggtggtcagaaggtcagtggagattgtagaatatatccactaaaggacggtggagtcaagggtggtccact 31338496  T
Q  314 gctcaaattcagcacttcaggtatctcttggtgtggtattgtccttagaggggacaccatgatgt 378  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  31338495 gcttaaattcagcacttgaggtatctcttggtgtggtattgtccttagaagggacaccatgatgt 31338431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 378
Target Start/End: Original strand, 4862888 - 4863252
Alignment:
Q  14 agatcagctgaaggaccatacgatgattcttgacagaagagccgacatttctctactaatcagagtgcatcttaaggcgttgacaataagtagagacatt 113  Q
    |||| ||||| |||||||   ||||||| ||||||| |||||| |||||||||  || ||||||| |||||||||| ||||| |||||| ||||||||||    
T  4862888 agattagctgtaggaccaggtgatgattgttgacaggagagccaacatttctcagctgatcagagagcatcttaagacgttggcaataattagagacatt 4862987  T
Q  114 gggaaaatcctccattagagtgttagagaattcttgcttaagagtgacaacccgagcattttggttgtcctgaaaaatgtcagtcaaacgattccatgtt 213  Q
    |||||||||||||||  ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| | |||||||||| | |    
T  4862988 gggaaaatcctccatacgagtgttagagaattcttgctcaagagtgacagcccgagcattttggttgtcctgaaaaatgtcagacgaacgattccaggct 4863087  T
Q  214 tccacagcagtggagtctggttccaagatggtggtcagaaggtcagtggagattgtagaatatatccactgaaggacggtggagtcaagggtggtccact 313  Q
    |||| || |||||||||||||||||| ||||||||||| ||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||    
T  4863088 tccatagtagtggagtctggttccaaaatggtggtcagcaggtcagtggatattgtggagtatatccactgaagaacggtggagtcaagggtggtccact 4863187  T
Q  314 gctcaaattcagcacttcaggtatctcttggtgtggtattgtccttagaggggacaccatgatgt 378  Q
    ||||||||||||||||  |||||||| |||||||||||||||||||||| ||||||  |||||||    
T  4863188 gctcaaattcagcactggaggtatctgttggtgtggtattgtccttagaagggacaatatgatgt 4863252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 40274054 - 40274281
Alignment:
Q  16 atcagctgaaggaccatacgatgattcttgacagaagagccgacatttctctactaa-----tcagagtgcatcttaaggcgttgacaataagtagagac 110  Q
    ||||| ||||| |||| ||||||||| ||||||| |||||||||||||||| ||| |     ||| |  |||||||||| || ||||| |||| ||||||    
T  40274054 atcagttgaagaaccagacgatgattgttgacaggagagccgacatttctcaactcaactggtcataaagcatcttaagacgctgacagtaagcagagac 40274153  T
Q  111 attgggaaaatcctccattagagtgttagagaattcttgcttaagagtgacaacccgagcattttggttgtcctgaaaaatgtcagtcaaacgattccat 210  Q
    ||||||||||||||||||  ||||||| ||||| |||| || |||||||||| | ||||||||||| || | ||||||||| ||   |||||||||||||    
T  40274154 attgggaaaatcctccatgcgagtgttggagaactctttctcaagagtgacagcacgagcattttgattattctgaaaaatatcttccaaacgattccat 40274253  T
Q  211 gtttccacagcagtggagtctggttcca 238  Q
    | ||| |  ||||||||||  |||||||    
T  40274254 gcttctattgcagtggagttgggttcca 40274281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 24 - 302
Target Start/End: Complemental strand, 19327836 - 19327558
Alignment:
Q  24 aaggaccatacgatgattcttgacagaagagccgacatttctctactaatcagagtgcatcttaaggcgttgacaataagtagagacattgggaaaatcc 123  Q
    |||||||| |||||| || |||||||  || | ||||| |||| |||  |||||| |||| ||||| || ||| | |||  ||||||||| |||||||||    
T  19327836 aaggaccagacgatggttgttgacaggtgaactgacatatctcaacttgtcagagagcattttaagacgctgatagtaaacagagacattaggaaaatcc 19327737  T
Q  124 tccattagagtgttagagaattcttgcttaagagtgacaacccgagcattttggttgtcctgaaaaatgtcagtcaaacgattccatgtttccacagcag 223  Q
    |||||  ||||||  ||||||||||||| |||||||||||||| | |||| ||||||||||||||||||| ||  ||||||||||| | ||||| | |||    
T  19327736 tccatgtgagtgtgcgagaattcttgctcaagagtgacaaccctaacattctggttgtcctgaaaaatgttagctaaacgattccaggattccataacag 19327637  T
Q  224 tggagtctggttccaagatggtggtcagaaggtcagtggagattgtagaatatatccactgaaggacggtggagtcaag 302  Q
    || ||||||||||||||||||| || || ||||| ||||||||||| || |||||||||| ||||||||||||||||||    
T  19327636 tgcagtctggttccaagatggtagttagcaggtcggtggagattgtggagtatatccactaaaggacggtggagtcaag 19327558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 45031246 - 45030962
Alignment:
Q  11 cagagatcagctgaaggaccatacgatgattcttgacagaagagccgacatttctctactaatcagagtgcatcttaaggcgttgacaataagtagagac 110  Q
    |||| ||||| || || |||| ||| ||||| ||||| | |||||||||||| ||| | |  |||||| ||||||| || |  || || || | ||||||    
T  45031246 cagatatcagttggagtaccagacggtgattgttgacgggagagccgacattcctcaattggtcagagagcatcttgagacactggcagtatgcagagac 45031147  T
Q  111 attgggaaaatcctccattagagtgttagagaattcttgcttaagagtgacaacccgagcattttggttgtcctgaaaaatgtcagtcaaacgattccat 210  Q
     |||||||| || |||||  | ||||| ||||| |||||||  ||||||||| | || || ||||| ||||| ||||| ||||| | |||||||||||||    
T  45031146 gttgggaaagtcttccatgcgggtgttggagaactcttgctcgagagtgacagcacgggcgttttgattgtcttgaaagatgtctgccaaacgattccat 45031047  T
Q  211 gtttccacagcagtggagtctggttccaagatggtggtcagaaggtcagtggagattgtagaatatatccactgaaggacggtgg 295  Q
    |   | || |||||||||| ||||||||| || ||  |||| | || |||||| ||||| ||||| ||||||||||| |||||||    
T  45031046 gcggctaccgcagtggagtttggttccaaaatagtcatcagtaagtaagtggaaattgtggaataaatccactgaagcacggtgg 45030962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 45026398 - 45026114
Alignment:
Q  11 cagagatcagctgaaggaccatacgatgattcttgacagaagagccgacatttctctactaatcagagtgcatcttaaggcgttgacaataagtagagac 110  Q
    |||| ||||| || || |||| ||| ||||| ||||| | |||||||||||| ||| | |  |||||| ||||||| || || || || || | ||||||    
T  45026398 cagatatcagttggagtaccagacggtgattgttgacgggagagccgacattcctcaattggtcagagagcatcttgagacgctggcagtatgcagagac 45026299  T
Q  111 attgggaaaatcctccattagagtgttagagaattcttgcttaagagtgacaacccgagcattttggttgtcctgaaaaatgtcagtcaaacgattccat 210  Q
     |||||||| || |||||  | ||||| ||||| |||||||  ||||||||| | || || ||||| ||||| ||||| |||||   ||||| |||||||    
T  45026298 gttgggaaagtcttccatgcgggtgttcgagaactcttgctcgagagtgacagcacgggcgttttgattgtcttgaaagatgtctaccaaacaattccat 45026199  T
Q  211 gtttccacagcagtggagtctggttccaagatggtggtcagaaggtcagtggagattgtagaatatatccactgaaggacggtgg 295  Q
    |   | || |||||||||| ||||||||| || ||  |||| | ||||||||| ||||| ||||| ||||||| ||| |||||||    
T  45026198 gcggctaccgcagtggagtttggttccaaaatagtcatcagtaagtcagtggaaattgtggaataaatccactaaagcacggtgg 45026114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 24206616 - 24206332
Alignment:
Q  11 cagagatcagctgaaggaccatacgatgattcttgacagaagagccgacatttctctactaatcagagtgcatcttaaggcgttgacaataagtagagac 110  Q
    |||| ||||| || || |||| ||| ||||| ||||| | |||||||||||| ||| | |  |||||| ||||||| || |  || || || | ||||||    
T  24206616 cagatatcagttggagtaccagacggtgattgttgacgggagagccgacattcctcaattggtcagagagcatcttgagacactggcagtatgcagagac 24206517  T
Q  111 attgggaaaatcctccattagagtgttagagaattcttgcttaagagtgacaacccgagcattttggttgtcctgaaaaatgtcagtcaaacgattccat 210  Q
     |||||||| || |||||  | ||||| ||||| |||||||  ||||||||| | || || ||||| ||||| ||||| ||||| | |||||||||||||    
T  24206516 gttgggaaagtcttccatgcgggtgttggagaactcttgctcgagagtgacagcacgggcgttttgattgtcttgaaagatgtctgccaaacgattccat 24206417  T
Q  211 gtttccacagcagtggagtctggttccaagatggtggtcagaaggtcagtggagattgtagaatatatccactgaaggacggtgg 295  Q
    |   | || |||||||||| ||||||||| || ||  | || | || |||||| || || ||||| ||||||||||| |||||||    
T  24206416 gcggctaccgcagtggagtttggttccaaaatagtcataagtaagtaagtggaaatagtggaataaatccactgaagcacggtgg 24206332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 28517 - 28237
Alignment:
Q  11 cagagatcagctgaaggaccatacgatgattcttgacagaagagccgacatttctctactaatcagagtgcatcttaaggcgttgacaataagtagagac 110  Q
    ||||||||||||||||||||| ||||||||| |||||||  ||||| ||||||||| ||| ||||||  ||||||||||||| ||||| |||| ||| ||    
T  28517 cagagatcagctgaaggaccagacgatgattgttgacaggggagcctacatttctcaactgatcagaaagcatcttaaggcgctgacagtaagcagatac 28418  T
Q  111 attgggaaaatcctccattagagtgttagagaattcttgcttaagagtgacaacccgagcattttggttgtcctgaaaaatgtcagtcaaacgattccat 210  Q
    ||| |||||||| |||||  |||||||||| || ||||||| |||||||||| | ||||||||||||||||| |||||||| ||   ||| |  ||||||    
T  28417 attaggaaaatcttccatacgagtgttagaaaactcttgctcaagagtgacagctcgagcattttggttgtcttgaaaaatatcttccaagcacttccat 28318  T
Q  211 gtttccacagcagtggagtctggttccaagatggtggtcagaaggtcagtggagattgtagaatatatccactgaaggacg 291  Q
    | |||||  ||||||||||  |||||||  || ||| |||  |  ||||| || || |||||||| |||||||||||||||    
T  28317 gcttccagtgcagtggagttaggttccagaatagtgctcaacaaatcagtagaaatagtagaataaatccactgaaggacg 28237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 22 - 287
Target Start/End: Complemental strand, 21157 - 20892
Alignment:
Q  22 tgaaggaccatacgatgattcttgacagaagagccgacatttctctactaatcagagtgcatcttaaggcgttgacaataagtagagacattgggaaaat 121  Q
    ||||| |||| ||| ||||| ||||||| |||||||||||||||| | |  |||||| |||||||||| || ||||| ||||  ||||||||||||||||    
T  21157 tgaagaaccaaacggtgattgttgacaggagagccgacatttctcaattggtcagagagcatcttaagacgctgacagtaagaggagacattgggaaaat 21058  T
Q  122 cctccattagagtgttagagaattcttgcttaagagtgacaacccgagcattttggttgtcctgaaaaatgtcagtcaaacgattccatgtttccacagc 221  Q
    |||||||  ||||||| ||||| ||||||| |||| | ||| | ||||| ||||| |||||||||||||| || | |||||| ||||||| ||| || ||    
T  21057 cctccatgtgagtgtttgagaactcttgctcaagaataacagcacgagcgttttgattgtcctgaaaaatatctgccaaacggttccatgcttcaacggc 20958  T
Q  222 agtggagtctggttccaagatggtggtcagaaggtcagtggagattgtagaatatatccactgaag 287  Q
    ||||||||  |||||||  || ||| |||| ||||| || || ||||| ||||| |||||||||||    
T  20957 agtggagttgggttccagaatagtgctcagcaggtcggttgaaattgtggaataaatccactgaag 20892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 16591236 - 16590945
Alignment:
Q  16 atcagctgaaggaccatacgatgattcttgacagaagagccgacatttctctactaatcagagtgcatcttaaggcgttgacaataagtagagacattgg 115  Q
    ||||| ||||| |||| ||||||||| ||||||| |||||||||||||||| |||  |||||  |||||||||| || ||||| |||| |||||| ||||    
T  16591236 atcagttgaagaaccagacgatgattgttgacaggagagccgacatttctcaactggtcagaaagcatcttaagacgctgacagtaagcagagacgttgg 16591137  T
Q  116 gaaaatcctccattagagtgttagagaattcttgcttaagagtgacaacccgagcattttggttgtcctgaaaaatgtcagtcaaacgattccatgtttc 215  Q
    |||||||||||||  ||||| | ||||| ||||||| |||||| ||| |  |||||||||| || ||||||||||||||   ||||||||||||    ||    
T  16591136 gaaaatcctccatgcgagtgctggagaactcttgctcaagagtaacagcaagagcattttgattatcctgaaaaatgtcttccaaacgattcca----tc 16591041  T
Q  216 cacagcagtggagtctggttccaagatggtggtcagaaggtcagtggagattgtagaatatatccactgaaggacggtggagtcaagggtggtcca 311  Q
     |  ||||||||||  |||||||| || |||||||  |  |||||||| || || ||||| |||||||| || |||||||  ||||| ||||||||    
T  16591040 tattgcagtggagttgggttccaaaatagtggtcaacaaatcagtggaaatagtggaataaatccactgtagaacggtggcatcaagagtggtcca 16590945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 295
Target Start/End: Complemental strand, 33162594 - 33162350
Alignment:
Q  51 agagccgacatttctctactaatcagagtgcatcttaaggcgttgacaataagtagagacattgggaaaatcctccattagagtgttagagaattcttgc 150  Q
    |||||||||||| ||| | |  |||||| ||||||| || || || || || | |||||| |||||||| || |||||  | ||||||||||| ||||||    
T  33162594 agagccgacattcctcaattggtcagagagcatcttgagacgctggcagtatgcagagacgttgggaaagtcttccatgcgggtgttagagaactcttgc 33162495  T
Q  151 ttaagagtgacaacccgagcattttggttgtcctgaaaaatgtcagtcaaacgattccatgtttccacagcagtggagtctggttccaagatggtggtca 250  Q
    |  ||||||||| | || || ||||| ||||| ||||| |||||   ||||| ||||||||   | || |||||||||| ||||||||| || ||  |||    
T  33162494 tcgagagtgacagcacgggcgttttgattgtcttgaaagatgtctaccaaacaattccatgcggctaccgcagtggagtttggttccaaaatagtcatca 33162395  T
Q  251 gaaggtcagtggagattgtagaatatatccactgaaggacggtgg 295  Q
    | | ||||||||| ||||| ||||| ||||||| ||| |||||||    
T  33162394 gtaagtcagtggaaattgtggaataaatccactaaagcacggtgg 33162350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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