View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12559_low_20 (Length: 333)
Name: NF12559_low_20
Description: NF12559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12559_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 328
Target Start/End: Complemental strand, 4872504 - 4872193
Alignment:
| Q |
17 |
gacatcagtggatttaaatggaacaaatcaccaattgccagattatcctttatcacataatggtagattgaaagtaaagccacatgctgcaggttttgca |
116 |
Q |
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| T |
4872504 |
gacatcagtggatttaaatggaacaaatcaccaattgccagattatcctttatcacataatggtagattgaaagtaaagccacaagctgcaggttttgca |
4872405 |
T |
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| Q |
117 |
gattcctttaccttctcaaaagatgatctggagaaagttcaggtatgatggagctaattgaatgtattgctcttaagtaaacaaacatgtgaaatatttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4872404 |
gattcctttaccttctcaaaagatgatctggagaaagttcaggtatgatggagctaattgaatgtattgctcttaagtaaacaaacatgtgaaatatttt |
4872305 |
T |
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| Q |
217 |
ccctaaacagtagaatatgcacatttccattagttggtaattaagttcccttnnnnnnngtaatttagtaattgggtcatatgatcacgtttgttttgtt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4872304 |
ccctaaacagtagaatatgcacatttccattagttggtaattaagttcccttaaaaaaagtaatttagtaattgggtcatatgatcacgtttgttttgtt |
4872205 |
T |
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| Q |
317 |
cactatgcttct |
328 |
Q |
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|||||||||||| |
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| T |
4872204 |
cactatgcttct |
4872193 |
T |
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