View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12559_low_21 (Length: 332)
Name: NF12559_low_21
Description: NF12559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12559_low_21 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 14 - 332
Target Start/End: Original strand, 9433053 - 9433371
Alignment:
| Q |
14 |
cataggaagatccatgcgaacaagaagatccagtatcttcgatgaagataacagtagctgcacttttaccgaaagatccacctgtgtatcggaaaatctc |
113 |
Q |
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| T |
9433053 |
cataggaagatccatgcgaacaagaagatccagtatcttcgatgaagataacagtagctgcacttttaccgaaagatccacctgtgtatcggaaaatctc |
9433152 |
T |
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| Q |
114 |
accgattccgtcgtcgacctccgtctcggtgaactcgcttccaagaatcacaaatccggaaaatcatcaacttctgaacaagaccttctagatctttctc |
213 |
Q |
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| T |
9433153 |
accgattccgtcgtcgacctccgtctcggtgaactcgcttccaagaatcacaaatccggaaaatcatcaacttctgaacaagaccttctagatctttctc |
9433252 |
T |
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| Q |
214 |
aagcttttagtgaatatgcttattcagcttgtagtagtgatatctccggtgagcttcaacggttggcgacgttaccgtcgccggagtgtgacggtggaag |
313 |
Q |
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| T |
9433253 |
aagcttttagtgaatatgcttattcagcttgtagtagtgatatctccggtgagcttcaacggttggcgacgttaccgtcgccggagtgtgacggtggaag |
9433352 |
T |
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| Q |
314 |
tggtggtggaggtgatggt |
332 |
Q |
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| T |
9433353 |
tggtgttggaggtgatggt |
9433371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 37 - 244
Target Start/End: Original strand, 3834070 - 3834278
Alignment:
| Q |
37 |
gaagatccagtatcttcgatgaagataacagtagctgcacttttaccgaaagatccacctgtgtatcggaaaatctcaccgattccgtcgtcgacctccg |
136 |
Q |
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| T |
3834070 |
gaagatccagtatcttcgatgaagataacagtagttgcactttcaccgaaagatccacctgtgtatcgaaaagtctcatcgattccgtcgtcgacctctg |
3834169 |
T |
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| Q |
137 |
tctcggtgaactcgcttccaagaatcacaaatccggaaaatcatcaacttctgaac-aagaccttctagatctttctcaagcttttagtgaatatgctta |
235 |
Q |
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| T |
3834170 |
tctcggcgaacttgcttccaagaataacaaatatggaaaatcatcaacttttgaactaagagcttctagatcgttctcaagcttttagtgaatatgctta |
3834269 |
T |
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| Q |
236 |
ttcagcttg |
244 |
Q |
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| T |
3834270 |
ttcagcttg |
3834278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 48677442 - 48677697
Alignment:
| Q |
14 |
cataggaagatccatgcgaacaagaagatccagtatcttcgatgaagataacagtagctgcacttttaccgaaagatccacctgtgtatcggaaaatctc |
113 |
Q |
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| T |
48677442 |
cataggaagatccatgtgaacaagaagatttagtatcttcgatgaagataacggtagttgcactttcaccgaaagatccacctgtgtatcgaaaagtctc |
48677541 |
T |
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| Q |
114 |
accgattccgtcgtcgacctccgtctcggtgaactcgcttccaagaatcacaaatccggaaaatcatcaacttctgaacaagaccttctagatctttctc |
213 |
Q |
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|||||||||||| |||||||||||||||| |||| |||||||||||| |||||| |||||||||||||||||||||||||| |||| | ||||||||| |
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| T |
48677542 |
accgattccgtcatcgacctccgtctcggcaaacttgcttccaagaataacaaatatggaaaatcatcaacttctgaacaagagcttcaaaatctttctc |
48677641 |
T |
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| Q |
214 |
aagcttttagtgaatatgcttattcagcttgtagtagtgatatctccggtgagctt |
269 |
Q |
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| T |
48677642 |
aagcttttagtgaatatgcttattcagcttgtagcagtgatatctccggtgagctt |
48677697 |
T |
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