View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12559_low_25 (Length: 296)
Name: NF12559_low_25
Description: NF12559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12559_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 3 - 291
Target Start/End: Original strand, 31942933 - 31943221
Alignment:
| Q |
3 |
aaaattaaactttaccttgtatatgaggcgttggccaaaagtgttgcaccaaattattttcaggaactaaatggttattaccgttattcaccataattga |
102 |
Q |
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| T |
31942933 |
aaaataaaattttaccttgtatatgaggcgttggccaaaagtgttgcaccaaattgttttcaggaactaaatggctattaccgttattcaccataattga |
31943032 |
T |
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| Q |
103 |
ttgactgaacctgctccatgaattaccaagttgtcctacttgatccagcaaatgaatttgagataacaatgttgcattatccctcatagcaatcccatta |
202 |
Q |
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| T |
31943033 |
ttgaccgggccttctccatgaattaccaagttgtcctacttgatcgagcaagtgaatttgagataacaatgttgcattatccctcatagcaatcccatta |
31943132 |
T |
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| Q |
203 |
gaagaacttgccaatgtattaggagattggtgatttcctctaatccttttgggtggacctctgccatcatccatggagtctctgcttct |
291 |
Q |
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| T |
31943133 |
aaagaacttgccaatgtactaggagattggtgatttcctctaatccttttgggtggacctctaccagaatccatggagtctatgcttct |
31943221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 31952125 - 31952414
Alignment:
| Q |
14 |
ttaccttgtatatgaggcgttggccaaaagtgttgcaccaaattattttcaggaactaaatggttattaccgttattcaccataattgattgactgaacc |
113 |
Q |
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| T |
31952125 |
ttaccttgtatatgaagtgttggttgaaagtgttgcaccaaattgttttcaggaattaaatgattattttcattattcaccataagagaccgacctggtc |
31952224 |
T |
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| Q |
114 |
tgctccatgaattaccaagttgtcctacttgatccagcaaatgaatttgagataacaatgttgcattatccctcatagcaatcccattag---------- |
203 |
Q |
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| T |
31952225 |
tactccatgaattaccaagttgttctacttgattgagcaaatgaatttgagatggcaatgttacattaccccccatagcaacctcgttagggggagaaat |
31952324 |
T |
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| Q |
204 |
--aagaacttgccaatgtattaggagattggtgatttcctctaatccttttgggtggacctctgccatcatccatggagtctctgcttct |
291 |
Q |
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| T |
31952325 |
agaagaacttgccaatgtattaggagattggtgatttcctctaattcttttgggtggacctctaccatcatccattgagtatatgcttct |
31952414 |
T |
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