View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12559_low_28 (Length: 267)

Name: NF12559_low_28
Description: NF12559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12559_low_28
NF12559_low_28
[»] chr8 (3 HSPs)
chr8 (66-244)||(42202638-42202816)
chr8 (82-238)||(44684426-44684582)
chr8 (139-176)||(3578048-3578085)
[»] chr5 (4 HSPs)
chr5 (95-244)||(3678241-3678389)
chr5 (89-242)||(2756301-2756454)
chr5 (87-237)||(42628996-42629146)
chr5 (82-179)||(3761007-3761104)
[»] chr4 (4 HSPs)
chr4 (95-244)||(55329099-55329248)
chr4 (87-234)||(18848013-18848160)
chr4 (82-242)||(42111001-42111161)
chr4 (88-215)||(55353539-55353666)
[»] chr2 (2 HSPs)
chr2 (118-244)||(38970997-38971123)
chr2 (98-179)||(16080465-16080546)
[»] chr7 (4 HSPs)
chr7 (87-244)||(6232156-6232314)
chr7 (87-236)||(48888137-48888286)
chr7 (88-208)||(19883466-19883586)
chr7 (87-215)||(44346457-44346585)
[»] chr6 (1 HSPs)
chr6 (87-244)||(380662-380820)
[»] chr3 (1 HSPs)
chr3 (87-236)||(51361229-51361378)
[»] scaffold0691 (1 HSPs)
scaffold0691 (82-242)||(1129-1289)
[»] chr1 (1 HSPs)
chr1 (82-179)||(13155021-13155117)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 66 - 244
Target Start/End: Complemental strand, 42202816 - 42202638
Alignment:
Q  66 acctgcgagctctagaaccataagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagagg 165  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42202816 acctgcgagctctagaaccataagtcccagacacctctaaaactgccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagagg 42202717  T
Q  166 caaggaggactcttaagtctagcattcgcccaattccacgaaatcaccttaatttcctcaactatttcaccataatcct 244  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42202716 caaggaggactcttaagtctagaattcacccaattccacaaaatcaccttaatttcctcaactatttcaccataatcct 42202638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 82 - 238
Target Start/End: Complemental strand, 44684582 - 44684426
Alignment:
Q  82 accataagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaa 181  Q
    |||| ||||||||||||||||||||||| ||||| || ||  |  ||||||||  | ||||||||||||||||| ||| ||||||| |||||||||||||    
T  44684582 accaaaagtcccagacacctctaaaactaccccacctgtcggagcaagcattccttggggttccaacaccactcataaaagaggcagggaggactcttaa 44684483  T
Q  182 gtctagcattcgcccaattccacgaaatcaccttaatttcctcaactatttcaccat 238  Q
    || | | | ||||||||||||| || | ||||||||| || ||||| ||||| ||||    
T  44684482 gttttgtaatcgcccaattccaagagagcaccttaatgtcatcaacaatttccccat 44684426  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 3578048 - 3578085
Alignment:
Q  139 gggttccaacaccactcgtaatagaggcaaggaggact 176  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  3578048 gggttccaacaccactcgtaaaagaggcaaagaggact 3578085  T

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Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 95 - 244
Target Start/End: Original strand, 3678241 - 3678389
Alignment:
Q  95 gacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtctagcattcgc 194  Q
    ||||||||||||||| ||| | |||||| |||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| | || |    
T  3678241 gacacctctaaaactgccc-acctatcttaataagcattcgatggggttccaacacaacttgtaatagaggcaaggaggactcttaagtctagtaatcac 3678339  T
Q  195 ccaattccacgaaatcaccttaatttcctcaactatttcaccataatcct 244  Q
    |||||||||||||||||||||||| |||||||| ||||||||| ||||||    
T  3678340 ccaattccacgaaatcaccttaatctcctcaacaatttcaccaaaatcct 3678389  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 89 - 242
Target Start/End: Original strand, 2756301 - 2756454
Alignment:
Q  89 gtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtctagc 188  Q
    ||||| ||| ||||||||||| ||||| |||||||| ||| ||||   | ||||||||||||||||||||||| ||||| ||||| ||||| |||||||     
T  2756301 gtcccggacgcctctaaaactaccccaactatctcagtaaacatttcttggggttccaacaccactcgtaataaaggcacggaggcctctttagtctaga 2756400  T
Q  189 attcgcccaattccacgaaatcaccttaatttcctcaactatttcaccataatc 242  Q
    |  |  |||||||||||||| ||||||||| || ||||| ||||||||||||||    
T  2756401 aaccatccaattccacgaaagcaccttaatctcatcaacaatttcaccataatc 2756454  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 87 - 237
Target Start/End: Original strand, 42628996 - 42629146
Alignment:
Q  87 aagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtcta 186  Q
    ||||||| ||| ||||||||||| ||||| ||||||||  |  |||||  | ||||||| ||||||||| ||||||||||| |||||||| || ||||||    
T  42628996 aagtcccggacgcctctaaaactaccccaactatctcagaagacattccttggggttccgacaccactcataatagaggcagggaggacttttcagtcta 42629095  T
Q  187 gcattcgcccaattccacgaaatcaccttaatttcctcaactatttcacca 237  Q
    | |  ||||||||||||||||| |||| ||||||| ||||| |||||||||    
T  42629096 gtaaccgcccaattccacgaaagcaccataatttcatcaacaatttcacca 42629146  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 3761007 - 3761104
Alignment:
Q  82 accataagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactctt 179  Q
    |||| |||||||| |||||||||||||| ||||| |||| ||| ||| |||||  | |||||| |||| ||||||||||||||||| |||| ||||||    
T  3761007 accaaaagtcccaaacacctctaaaactaccccagctatatcagtaaacattccttggggttcaaacagcactcgtaatagaggcagggagaactctt 3761104  T

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Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 95 - 244
Target Start/End: Complemental strand, 55329248 - 55329099
Alignment:
Q  95 gacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtctagcattcgc 194  Q
    ||||||||||||||| ||||| ||||||||||||||||||  |  ||||||||||||||||||||||||||||||||| |||||||||||| | |||||     
T  55329248 gacacctctaaaactgccccacctatctcaataagcattccttgaggttccaacaccactcgtaatagaggcaaggagaactcttaagtcttgaattcgt 55329149  T
Q  195 ccaattccacgaaatcaccttaatttcctcaactatttcaccataatcct 244  Q
     ||||| ||||||||||||||||||||||| || ||||||||| ||||||    
T  55329148 tcaatttcacgaaatcaccttaatttcctccacaatttcaccaaaatcct 55329099  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 87 - 234
Target Start/End: Complemental strand, 18848160 - 18848013
Alignment:
Q  87 aagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtcta 186  Q
    ||||||| ||||||||||||||| ||||| ||||||||||| ||||||  | ||||||||||||||||||||||||||||| |||||||| |||||||||    
T  18848160 aagtcccggacacctctaaaactaccccaactatctcaataggcattccttggggttccaacaccactcgtaatagaggcagggaggacttttaagtcta 18848061  T
Q  187 gcattcgcccaattccacgaaatcaccttaatttcctcaactatttca 234  Q
    | |  ||||||||||||| ||| ||||||||| || ||||| ||||||    
T  18848060 gtaaccgcccaattccaccaaagcaccttaatgtcatcaacaatttca 18848013  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 242
Target Start/End: Original strand, 42111001 - 42111161
Alignment:
Q  82 accataagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaa 181  Q
    |||| ||||||| ||||||||||||||| ||||| || ||  |  ||||||||  | |||||||||||||||||  || |||||||  ||||||||||||    
T  42111001 accaaaagtcccggacacctctaaaactaccccacctgtcggagcaagcattccttggggttccaacaccactcaaaaaagaggcagtgaggactcttaa 42111100  T
Q  182 gtctagcattcgcccaattccacgaaatcaccttaatttcctcaactatttcaccataatc 242  Q
    |||| | | ||||||||||||| || | ||||||||| || ||||| ||||| ||||||||    
T  42111101 gtcttgtaatcgcccaattccaagagagcaccttaatgtcatcaacaatttccccataatc 42111161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 88 - 215
Target Start/End: Complemental strand, 55353666 - 55353539
Alignment:
Q  88 agtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtctag 187  Q
    |||||| | ||||||| ||||| ||||| ||||| ||| | |||||   | |||||||| ||||| |||||| |||||||||||||||| |||||||| |    
T  55353666 agtccctgccacctctgaaactaccccacctatcgcaaaaggcatttcttggggttccagcaccaatcgtaaaagaggcaaggaggacttttaagtctgg 55353567  T
Q  188 cattcgcccaattccacgaaatcacctt 215  Q
     |||||||||||||||||| ||||||||    
T  55353566 aattcgcccaattccacgagatcacctt 55353539  T

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Target: chr2 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 38971123 - 38970997
Alignment:
Q  118 tatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtctagcattcgcccaattccacgaaatcaccttaa 217  Q
    |||||||||||||||||  | |||||||||||||||||||||||||||||| ||||||| |||||||||| ||| |||||||||||||||||||||||||    
T  38971123 tatctcaataagcattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctagaatttgcccaattccacgaaatcaccttaa 38971024  T
Q  218 tttcctcaactatttcaccataatcct 244  Q
    ||||||| || ||||||||| ||||||    
T  38971023 tttcctccacaatttcaccaaaatcct 38970997  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 16080546 - 16080465
Alignment:
Q  98 acctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactctt 179  Q
    |||||||||||| |||||  | |||||  || |||||  | ||||||||||||||||| ||| |||||||||||||||||||    
T  16080546 acctctaaaactaccccaattttctcatcaaacattccttggggttccaacaccactcataaaagaggcaaggaggactctt 16080465  T

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Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 87 - 244
Target Start/End: Complemental strand, 6232314 - 6232156
Alignment:
Q  87 aagtcccagacacctctaaaacttccccatct-atctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtct 185  Q
    ||||||| ||||||||||||||| |||||  | ||||||||||||||||  | |||||||| |||||||||||||||||||| ||||||||| |||||||    
T  6232314 aagtcccggacacctctaaaactgccccacattatctcaataagcattccttggggttccagcaccactcgtaatagaggcatggaggactcctaagtct 6232215  T
Q  186 agcattcgcccaattccacgaaatcaccttaatttcctcaactatttcaccataatcct 244  Q
    || ||| |||||||||||||||||||||||||| ||||| || | ||||||| ||||||    
T  6232214 agaattagcccaattccacgaaatcaccttaatatcctccaccaattcaccaaaatcct 6232156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 87 - 236
Target Start/End: Complemental strand, 48888286 - 48888137
Alignment:
Q  87 aagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtcta 186  Q
    ||||||| |||||||||| |||| ||||| | ||||||| |  |||||  | ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48888286 aagtcccggacacctctagaactaccccaccaatctcaaaagacattccttggggttccaacaccactcgtaatagaggcaaggaggactctttagtcta 48888187  T
Q  187 gcattcgcccaattccacgaaatcaccttaatttcctcaactatttcacc 236  Q
    | |||| ||||||||||||| | ||||||||| || ||||| ||||||||    
T  48888186 gaattcacccaattccacgagagcaccttaatatcatcaaccatttcacc 48888137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 88 - 208
Target Start/End: Original strand, 19883466 - 19883586
Alignment:
Q  88 agtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtctag 187  Q
    |||||| ||||||||||||||| ||||| |||||||||||| |||||  | ||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  19883466 agtcccggacacctctaaaactaccccaactatctcaataaacattccttggggttccaacaccactcgtaatagaggcacggaggactctttagtctag 19883565  T
Q  188 cattcgcccaattccacgaaa 208  Q
        |||||||||||||||||    
T  19883566 acaccgcccaattccacgaaa 19883586  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 87 - 215
Target Start/End: Complemental strand, 44346585 - 44346457
Alignment:
Q  87 aagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtcta 186  Q
    |||||||  |||||||| ||||||||||| ||| | ||| | ||||||  | |||||||| ||||||| |||| |||||||||||||||| |||||||||    
T  44346585 aagtccctaacacctctgaaacttccccacctaacgcaaaaggcattctttggggttccagcaccacttgtaaaagaggcaaggaggacttttaagtcta 44346486  T
Q  187 gcattcgcccaattccacgaaatcacctt 215  Q
    | |||||||||||| ||||||| ||||||    
T  44346485 gaattcgcccaattacacgaaagcacctt 44346457  T

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Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 87 - 244
Target Start/End: Original strand, 380662 - 380820
Alignment:
Q  87 aagtcccagacacctctaaaacttccccatct-atctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtct 185  Q
    ||||||| ||||||||||||||| |||||  | ||||||||||||||||  | |||||||| |||||||||||||||||||| ||||||||| |||||||    
T  380662 aagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccagcaccactcgtaatagaggcatggaggactcctaagtct 380761  T
Q  186 agcattcgcccaattccacgaaatcaccttaatttcctcaactatttcaccataatcct 244  Q
    || ||| |||||||||||||||||||||||||| ||||| || | ||||||| ||||||    
T  380762 agaattagcccaattccacgaaatcaccttaatatcctccaccaattcaccaaaatcct 380820  T

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Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 87 - 236
Target Start/End: Complemental strand, 51361378 - 51361229
Alignment:
Q  87 aagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtcta 186  Q
    ||||||| ||||||||||||||| ||||| ||||||||||| ||||||  | ||||||||||||||||| ||||||||||| |||| ||| || ||||||    
T  51361378 aagtccctgacacctctaaaactaccccaactatctcaataggcattccttggggttccaacaccactcataatagaggcagggagaacttttgagtcta 51361279  T
Q  187 gcattcgcccaattccacgaaatcaccttaatttcctcaactatttcacc 236  Q
    | |  || |||||||||| ||| ||||||||| || | ||| ||||||||    
T  51361278 gtaaccgtccaattccacaaaagcaccttaatgtcataaacaatttcacc 51361229  T

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Target: scaffold0691 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 242
Target Start/End: Complemental strand, 1289 - 1129
Alignment:
Q  82 accataagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaa 181  Q
    |||| ||||||| ||||||||||||||| ||||| || ||  |  ||||||||  | || |||||||||||||| ||| ||||||| |||||||||||||    
T  1289 accaaaagtcccggacacctctaaaactaccccacctgtcggagcaagcattccttgggcttccaacaccactcataaaagaggcagggaggactcttaa 1190  T
Q  182 gtctagcattcgcccaattccacgaaatcaccttaatttcctcaactatttcaccataatc 242  Q
    |||| | | ||||||||||||| |  | ||||||||| || ||||| ||||| ||||||||    
T  1189 gtcttgtaatcgcccaattccaagggagcaccttaatgtcatcaacaatttccccataatc 1129  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 179
Target Start/End: Complemental strand, 13155117 - 13155021
Alignment:
Q  82 accataagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactctt 179  Q
    |||| |||||||| ||||||||||| || ||| | || ||||| ||| |||||  |||||||| |||||||||||||||||||||||| |||||||||    
T  13155117 accaaaagtcccaaacacctctaaa-ctacccgagctttctcagtaaacattctttagggttcaaacaccactcgtaatagaggcaagtaggactctt 13155021  T

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