View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12559_low_30 (Length: 259)
Name: NF12559_low_30
Description: NF12559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12559_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 45254021 - 45254270
Alignment:
| Q |
1 |
ttttcctactgaaggaaatataattgattgcattcgttatggtgatcccaaatatgagacacttgatattaggaaaggtttgcattgtgcaattgagcaa |
100 |
Q |
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| T |
45254021 |
ttttcctactgaaggaaatataattcattgcattcgttatggtgatcccaaatatgagacacttgatattaggaaaggtttgcattgtgcaattgagcaa |
45254120 |
T |
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| Q |
101 |
cagaaggtggttaaacgagtatttggcacattgcgtttgtatattgttgcaaatgagaatctatggaagtgtgtcaaccctttacgtggtttgcccagtc |
200 |
Q |
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| T |
45254121 |
cagaaggtggttaaacgagtatttggcacattgcgtttgtatattgttgcaaatgagaatctatggaagtgtgtcaaccctttacgtggtttgcccagtc |
45254220 |
T |
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| Q |
201 |
atttcccagatgcaatctgggttaggattgagaaatttcttgcttcatct |
250 |
Q |
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| T |
45254221 |
atttcccagatgcaatctgggttaggattgagaaatttcttgcttcatct |
45254270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 44261618 - 44261382
Alignment:
| Q |
1 |
ttttcctactgaaggaaatataattgattgcattcgttatggtgatcccaaatatgagacacttgatattaggaaaggtttgcattgtgcaattgagcaa |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| |
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| T |
44261618 |
ttttcctatcgaaggaaatataattgattgcattcgttatggtgatcccaaatatgagacagttgatattaggaagggtttacattgtgcaattgagcaa |
44261519 |
T |
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| Q |
101 |
cagaaggtggttaaacgagtatttggcacattgcgtttgtatattgttgcaaatgagaatctatggaagtgtgtcaa---ccctttacgtggtttgccca |
197 |
Q |
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| T |
44261518 |
cagaaggtggttaaatgagtctttggcacattacgtt----------------tgagaatctatggaagtgtgtgaacccccccttacgtggtttgccaa |
44261435 |
T |
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| Q |
198 |
gtcatttcccagatgcaatctgggttaggattgagaaatttcttgcttcatct |
250 |
Q |
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| T |
44261434 |
gtcatttcccagacgcaatctgggttaggatagagcaattccttgcttcatct |
44261382 |
T |
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