View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12559_low_31 (Length: 255)
Name: NF12559_low_31
Description: NF12559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12559_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 36724252 - 36724378
Alignment:
| Q |
118 |
actgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttctaagagcatccacatctttcacaaagtctagagaaaaatctgt |
217 |
Q |
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| T |
36724252 |
actgtctacaagcatctataatgcatctaaattcactactatcttatatgcttgttctaagagcatccacatccttcacagagtctagagaaaaatctgt |
36724351 |
T |
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| Q |
218 |
attatcaaattgaaggtctgatgtcca |
244 |
Q |
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| T |
36724352 |
attatcaaattgaaggtctgatgtcca |
36724378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 36723765 - 36723895
Alignment:
| Q |
1 |
tcatcataggtgtgggagttagtattatgtgggactatctgagctaactcatgagcaacctcattagcctgactttattaaactcaatttgagagttttg |
100 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| | |||||| |||||| |||||||||||| || ||||||||| |
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| T |
36723765 |
tcatcataggtgtgagagctagtattatgtgggactatctgagctaactcgtgagcaatcccattagtctgactctattaaactcaacttaagagttttg |
36723864 |
T |
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| Q |
101 |
aaatctactatgaaataactgtctacaagca |
131 |
Q |
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| T |
36723865 |
aaatctactatgaaataactgtctacaagca |
36723895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 245
Target Start/End: Complemental strand, 712314 - 712145
Alignment:
| Q |
76 |
tattaaactcaatttgagagttttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttct |
175 |
Q |
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| T |
712314 |
tattaaactcaacatgagagttttaaaatctattttgaaacaactatctacatgcaagtataatacatccaaattcacaactatcttctacacatgttct |
712215 |
T |
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| Q |
176 |
aagagcatccacatctttcacaaagtctagagaaaaatctgtattatcaaattgaaggtctgatgtccat |
245 |
Q |
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| T |
712214 |
aaaagcatccacaaccttcttagagtctagagcaaaatctacattatcaaattgaaggtatgatgtccat |
712145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 244
Target Start/End: Complemental strand, 717577 - 717356
Alignment:
| Q |
24 |
attatgtgggactatctgagctaactcatgagcaacctcattagcctgactt-tattaaactcaatttgagagttttgaaatctactatgaaataactgt |
122 |
Q |
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|||||||||| |||| ||||||||||| | || | | ||||||| || || |||||||||||| |||||||||||||||||||| || ||||| ||| |
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| T |
717577 |
attatgtggggctatatgagctaactcgtaagtgatcccattagcttgtctcctattaaactcaacatgagagttttgaaatctactttggaataattgt |
717478 |
T |
|
| Q |
123 |
ctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttctaagagcatccacatctttcacaaagtctagagaaaaatctgtattat |
222 |
Q |
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| T |
717477 |
ctacattcaactataatacatccaaattcactactatctcctacacatcttctaaaagcatcaacaaccttcttagagtctagagctaaatctacattat |
717378 |
T |
|
| Q |
223 |
caaattgaaggtctgatgtcca |
244 |
Q |
| |
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|||||||||||| ||||||||| |
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| T |
717377 |
caaattgaaggtgtgatgtcca |
717356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 244
Target Start/End: Complemental strand, 14541248 - 14541080
Alignment:
| Q |
76 |
tattaaactcaatttgagagttttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttct |
175 |
Q |
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||||||||||||| ||||||||| ||| |||| ||||| | ||||||||| |||||||||| |||||||||| || |||||||| || |||||| |
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| T |
14541248 |
tattaaactcaatacgagagtttttaaaattactttgaaacacttgtctacaaacatctataatacatctaaatttactattatcttctacatatgttct |
14541149 |
T |
|
| Q |
176 |
aagagcatccacatctttcacaaagtctagagaaaaatctgtattatcaaattgaaggtctgatgtcca |
244 |
Q |
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| T |
14541148 |
aaaagcatccacaatcttctaagagtctagagaaaaatatacattatcaaattgaaggtatgatgtcca |
14541080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 2087537 - 2087573
Alignment:
| Q |
209 |
aaaatctgtattatcaaattgaaggtctgatgtccat |
245 |
Q |
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||||||| | ||||||||||||||||||||||||||| |
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| T |
2087537 |
aaaatctattttatcaaattgaaggtctgatgtccat |
2087573 |
T |
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