View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12559_low_36 (Length: 243)
Name: NF12559_low_36
Description: NF12559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12559_low_36 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 38598570 - 38598352
Alignment:
| Q |
12 |
agcagagacagtgctttacggagtgagcaagtctattgagaaactggccggagaaagtaactcacactctcatgcatcgatgagtcatttatagccagat |
111 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38598570 |
agcagagacggtgctttacggagtgagcaagtctattgagaaactggccggagaaagtaactcacactctcatgcatcgatgagtcatttatagccagat |
38598471 |
T |
|
| Q |
112 |
ttcagcaacccgcatgtgaagaaaaatcggaggtccattagaagcaatcttaagtgctgactaatttgaggcagtcaaacacagttgggcaattctaagc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38598470 |
ttcagcaacccgcatgtgaagaaaaatcggaggtccattagaagcaatcttaagtgctgactaatttgaggcagtcaaacacagttgggcaattctaagc |
38598371 |
T |
|
| Q |
212 |
aagcgagcactcatgatgt |
230 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
38598370 |
aagcaagcactcatgatgt |
38598352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University