View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12559_low_37 (Length: 241)
Name: NF12559_low_37
Description: NF12559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12559_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 99 - 208
Target Start/End: Original strand, 26860700 - 26860808
Alignment:
| Q |
99 |
taacgttgcgatatgcttgtttgattttggagtccacggaacaacttcatttattttcattttatatactactctctccgttttcatgatgcttgtcgtt |
198 |
Q |
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| T |
26860700 |
taacgttgcgatatgcttgtttgattttggagtccacggaacaacttcatttattatcatttcatataatactccctcc-atttcacaatgtttgttgtt |
26860798 |
T |
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| Q |
199 |
tttgaggaaa |
208 |
Q |
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| T |
26860799 |
tttgaggaaa |
26860808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 26660803 - 26660854
Alignment:
| Q |
115 |
ttgtttgattttggagtccacggaacaacttcatttattttcattttatata |
166 |
Q |
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| T |
26660803 |
ttgtctgattttggagtccacaaaacaacttcatttatttttattttatata |
26660854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 26766774 - 26766825
Alignment:
| Q |
115 |
ttgtttgattttggagtccacggaacaacttcatttattttcattttatata |
166 |
Q |
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| T |
26766774 |
ttgtctgattttggagtccacaaaacaacttcatttatttttattttatata |
26766825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 26860441 - 26860486
Alignment:
| Q |
15 |
gacatcatatgagattttaatgtttcaataatggaagtgatgaaga |
60 |
Q |
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| T |
26860441 |
gacatcatatgagattttaatatttcaatcacggaactgatgaaga |
26860486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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