View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12559_low_44 (Length: 216)
Name: NF12559_low_44
Description: NF12559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12559_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 48420343 - 48420520
Alignment:
| Q |
18 |
agagacagaagggaaacaaaaacctcagggtccaagtggtaaagatggaccaggtcaccaagtgagggaataagaatagcataatttgatcctggtgtga |
117 |
Q |
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| T |
48420343 |
agagacagaagggaaacaaaaacctcagggtccaagtggtaaagatggaccaggtcaccaagtgagggaataagaatagcataatttgatcctggtgtga |
48420442 |
T |
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| Q |
118 |
ctgcactgcctagaaaatccacatattgaagaagagtgccatgacatctatcaaattgttcactgaccattttaatgt |
195 |
Q |
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| T |
48420443 |
ctgcactgcctagaaaatccacatattgaagaagagtgccatgacatctatcaaattgttcactgaccattttaatgt |
48420520 |
T |
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Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 44779831 - 44779998
Alignment:
| Q |
20 |
agacagaagggaaacaaaaacctcagggtccaagtggtaaagatggaccaggtcaccaagtgagggaataagaatagcataatttgatcctggtgtgact |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44779831 |
agacagaagggaaacaaaaacctcagggtccaagtggtaaagatggatcaagtcatcaagagagggaataagaatagcataatttgatcctggtgtgact |
44779930 |
T |
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| Q |
120 |
gcactgcctagaaaatccacatattgaagaagagtgccatgacatctatcaaattgttcactgaccat |
187 |
Q |
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| T |
44779931 |
gcactgcctagaaaatccacatattgaaggagagttccatggcatctatcaaactgttcgctgaccat |
44779998 |
T |
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