View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12559_low_5 (Length: 538)
Name: NF12559_low_5
Description: NF12559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12559_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 16 - 434
Target Start/End: Complemental strand, 20598034 - 20597615
Alignment:
| Q |
16 |
catcttgcccttttcatctgactgttgtccaacaattcattggcatccttgtttcttctcttttttggtctaccaggttgnnnnnnnn-atgggtggtgg |
114 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20598034 |
catcttgcccttttcatctgagtgttgtccaacaattcattggcatccttgtttcttctcttttttggtctaccaggttgtttttttttatgggtggtgg |
20597935 |
T |
|
| Q |
115 |
ctgaagattagtgtactcagtcctttgccataaactttgaccattagctggataaatggaactactgtaacatgctacatatttgtccttcatgaagata |
214 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20597934 |
ctgaagatcagtgtactcagtcctttgccataaactttgaccattagctggataaatggaactactgtaacatgctacatatttgtccttcatgaagata |
20597835 |
T |
|
| Q |
215 |
tctggaacaaagtcaaatatgttcatgtcgaacttcttcatacatgaaatagcatgacagcagggcaatcctattagtagccatttcctgcagtcacaag |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20597834 |
tctggaacaaagtcaaatatgttcatgtcgaacttcttcatacatgaaatagcatgacagcagggcaatcctgttagtagccatttcctgcagtcacaag |
20597735 |
T |
|
| Q |
315 |
accatctttgcaggttgacatgaaacttgtcaccacttaaagaaacatgcctaacttcataatcaaactcatttgcacgcctacaaatataacatttcat |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20597734 |
accatctttgcaggttgacatgaaacttgtcaccacttaaagaaacatgcctaacttcataatcaaactcatttgcacgcctacaaatataacatttcat |
20597635 |
T |
|
| Q |
415 |
aaaattaatatcactactaa |
434 |
Q |
| |
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|||||||||||||||||||| |
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| T |
20597634 |
aaaattaatatcactactaa |
20597615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 444 - 526
Target Start/End: Complemental strand, 20597514 - 20597432
Alignment:
| Q |
444 |
tgttgggtaacacaccatccttcaacattgcagctttctgcctgtttgcttcccatctctccatcaagtacactctgatgtcc |
526 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20597514 |
tgttgggtaacacaccatcctccaacattgcagctttctgcctgtttgcttcccatctctccatcaggtacactctgatgtcc |
20597432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 432
Target Start/End: Complemental strand, 8699033 - 8698618
Alignment:
| Q |
16 |
catcttgcccttttcatctgactgttgtccaacaattcattggcatccttgtttcttctcttttttggtctaccaggttgnnnnnnnnatgggtggtggc |
115 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8699033 |
catcttgcccttttcatctgagtgttgtccaacaattcattagcatccttgtttcttctcttttttggtctaccaggttgttttttg-atgggtggtggc |
8698935 |
T |
|
| Q |
116 |
tgaagattagtgtactcagtcctttgccataaactttgaccattagctggataaatggaactactgtaacatgctacatatttgtccttcatgaagatat |
215 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
8698934 |
tgaagatcagtgtactcagtcctttgccataaactttgaccattagccggataaatggaactagagtaacatgctacatatttgtccttcatgaagatat |
8698835 |
T |
|
| Q |
216 |
ctggaacaaagtcaaatatgttcatgtcgaacttcttcatacatgaaatagcatgacagcagggcaatcctattagtagccatttcctgcagtcacaaga |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
8698834 |
ctggaacaaagtcaaatatgttcatgtcgaacttcttcatacatgaaatagcatgacagcagggcaatcctgttagtaaccatttcctgcagtcacaaga |
8698735 |
T |
|
| Q |
316 |
ccatctttgcaggttgacatgaaacttgtcaccacttaaagaaacatgcctaacttcataatcaaactcatttgcacgcctacaaatataacatttcata |
415 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8698734 |
ccatctttgcaggttgacatgaaacttgtgaccagttaaagaaacatgtctaacttcataatcaaactcatttgcacgcctacaaatataacatttcata |
8698635 |
T |
|
| Q |
416 |
aaattaatatcactact |
432 |
Q |
| |
|
|||||| |||| ||||| |
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|
| T |
8698634 |
aaattagtatcgctact |
8698618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 444 - 523
Target Start/End: Complemental strand, 8698514 - 8698435
Alignment:
| Q |
444 |
tgttgggtaacacaccatccttcaacattgcagctttctgcctgtttgcttcccatctctccatcaagtacactctgatg |
523 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8698514 |
tgttgggtaacacaccatcctccaacattgcagctttctgcctgtttgcttcccatctctccatcaggtacactctgatg |
8698435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 478 - 519
Target Start/End: Original strand, 37101837 - 37101878
Alignment:
| Q |
478 |
tttctgcctgtttgcttcccatctctccatcaagtacactct |
519 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||| |
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|
| T |
37101837 |
tttctgcctatttgcttcccatctctccatcaggtacactct |
37101878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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