View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12559_low_9 (Length: 440)
Name: NF12559_low_9
Description: NF12559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12559_low_9 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 24 - 400
Target Start/End: Original strand, 11797623 - 11797988
Alignment:
| Q |
24 |
cgacacaacagcgacacttgtaattacattaaattatgtcannnnnnnn-caaaattttattggtgttgatgtgcccgtgtcaatgtcgtgtcatgtgtc |
122 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11797623 |
cgacacaacaccgacacttgtgattacattaaattatgtcatttttttttcaaaattttattggtgttgatgtgcccgtgtcaatgtcgtgtcatgtgtc |
11797722 |
T |
|
| Q |
123 |
catgtttgtgtccatgcttcatagacagatggatcaaactcataatcaattcttttcgtttcgattaacannnnnnnnnnngtttattgtgtttctaaat |
222 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| | ||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
11797723 |
catg------------cttcatagacagatggatcaaactcataattagttcttgtcgtttcgattaacatttttttatttatttattgtgtttctaaat |
11797810 |
T |
|
| Q |
223 |
gcaatgagaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatct |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||| ||||| |||||||||||||||||||| |
|
|
| T |
11797811 |
gcaatgagaattgaaatgaattatgaatgttatgtttaggtgtggaagtggcagagagggtatcatattatggaattcaagggaatttgatatcatatct |
11797910 |
T |
|
| Q |
323 |
aacaggaccactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcc |
400 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||| | ||||| ||| |||||| |||||||||| |||| ||||| |
|
|
| T |
11797911 |
aacaggaccactcaaacaaagcactgcaaaagctgctgaaaatgtgaatgtttgggttggaactgcttctctacttcc |
11797988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 229 - 400
Target Start/End: Original strand, 11675880 - 11676051
Alignment:
| Q |
229 |
agaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacagg |
328 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
11675880 |
agaattgaaatgagttatgaatgttttgtataggtgtggaagtggcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacagg |
11675979 |
T |
|
| Q |
329 |
accactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcc |
400 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| ||||||| ||||||||||||||| |||| |||||||||| |
|
|
| T |
11675980 |
accactcaaacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagttgcttctctccttcc |
11676051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 229 - 400
Target Start/End: Original strand, 11684159 - 11684330
Alignment:
| Q |
229 |
agaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacagg |
328 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
11684159 |
agaattgaaatgagttatgaatgttttgtataggtgtggaagtggcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacagg |
11684258 |
T |
|
| Q |
329 |
accactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcc |
400 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| ||||||| ||||||||||||||| |||| |||||||||| |
|
|
| T |
11684259 |
accactcaaacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagttgcttctctccttcc |
11684330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 226 - 412
Target Start/End: Original strand, 11701770 - 11701956
Alignment:
| Q |
226 |
atgagaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaac |
325 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| |||||| |||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
11701770 |
atgagaatttaaatggattatgaatgttatgtttaggtgtggaagtggcagagagggtatcatattatggaattcaagggaatttgatatcatatctaac |
11701869 |
T |
|
| Q |
326 |
aggaccactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcccctgttaggtgc |
412 |
Q |
| |
|
||| ||||||||||| ||||||| |||||||||||||||||| ||| ||||||||||||| ||| |||| ||||| || |||||||| |
|
|
| T |
11701870 |
agggccactcaaacagagcactgcaacagctgctaagaatgtaaatgtttgggctggaacagcttctctacttcctctcttaggtgc |
11701956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 237 - 400
Target Start/End: Original strand, 11695984 - 11696147
Alignment:
| Q |
237 |
aatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacaggaccactca |
336 |
Q |
| |
|
|||||||| |||||||| | ||||||||||||| ||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11695984 |
aatgaattgtgaatgttatatttaggtgtggaaatggcagagagggcatcatattatggaattcaagggaatttgatatcatatctaacaggaccactca |
11696083 |
T |
|
| Q |
337 |
aacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcc |
400 |
Q |
| |
|
|||||||||||| || ||||||| | ||||| ||||||||||||||||||||| |||| ||||| |
|
|
| T |
11696084 |
aacaaagcactgcaaaagctgctgaaaatgtgaatatttgggctggaactgcttctctacttcc |
11696147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 257 - 400
Target Start/End: Original strand, 11778983 - 11779126
Alignment:
| Q |
257 |
tttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacaggaccactcaaacaaagcactgtaacagct |
356 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| || |||| || |||| || |||||||||||||||||||| ||||||||||||||||||| ||| ||| |
|
|
| T |
11778983 |
tttaggtgtggaggtggcagagaggatgtcatattttggggttaagggaaacttgatatcatatctaacagggccactcaaacaaagcactgcaactgct |
11779082 |
T |
|
| Q |
357 |
gctaagaatgtcaatatttgggctggaactgctgctctccttcc |
400 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| |||||||||| |
|
|
| T |
11779083 |
gctaagaatgtgaatgtttgggctggaactgcttctctccttcc |
11779126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 226 - 412
Target Start/End: Original strand, 16415 - 16601
Alignment:
| Q |
226 |
atgagaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaac |
325 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||| | ||||||| |||| || ||||||||||||||||| |
|
|
| T |
16415 |
atgagaattgaaatggattatgaatgttatgtttaggtgtggaagtagcagagaggatatcatatattgggattaagggaaacttgatatcatatctaac |
16514 |
T |
|
| Q |
326 |
aggaccactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcccctgttaggtgc |
412 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||| ||||| || |||||||| |
|
|
| T |
16515 |
aggaccactcaaacaaagcactgcaacagctgctaagaatgtgaatatttgggctggaactgcttctctacttcctctcttaggtgc |
16601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 9522959 - 9522917
Alignment:
| Q |
20 |
acaccgacacaacagcgacacttgtaattacattaaattatgt |
62 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| | |||||||| |
|
|
| T |
9522959 |
acaccgacacaacaccgacacttgtaattacactgaattatgt |
9522917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 26526751 - 26526789
Alignment:
| Q |
24 |
cgacacaacagcgacacttgtaattacattaaattatgt |
62 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
26526751 |
cgacacaacaccgacacttgtaattatattaaattatgt |
26526789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 43243139 - 43243103
Alignment:
| Q |
26 |
acacaacagcgacacttgtaattacattaaattatgt |
62 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
43243139 |
acacgacatcgacacttgtaattacattaaattatgt |
43243103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University