View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1255_high_19 (Length: 252)
Name: NF1255_high_19
Description: NF1255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1255_high_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 228
Target Start/End: Original strand, 20400953 - 20401178
Alignment:
| Q |
3 |
ccttaatagagctatgattattacataaatattattcagtaaccctagcttggaaatttgattcaaactatagctttttcagattcagtagcatcaataa |
102 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
20400953 |
ccttaatagagctatttttattacataaatattattcagtaaccctagcttggaaatttgattcaaactacagctttttcagattcagtagcatcaacaa |
20401052 |
T |
|
| Q |
103 |
atacaaccctaaagggatcattttcagttgggaccaaacgccatccattctcatctctatacctcccaatatcactacaagcaccaggtggagcactgaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20401053 |
atacaaccctaaagggatcattttcagttgggaccaaacgccatccattctcatctctatacctcccaatatcactacaagcaccaggtggagcactgaa |
20401152 |
T |
|
| Q |
203 |
caatggacaatacacaagcttgtatg |
228 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
20401153 |
caatggacaatacacaagcttgtatg |
20401178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 20433178 - 20433405
Alignment:
| Q |
1 |
aaccttaatagagctatgattattacataaatattattcagtaaccctagcttggaaatttgattcaaactatagctttttcagattcagtagcatcaat |
100 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20433178 |
aaccctaatagagctatttttattacataaatattattcagtaaccctagcttggaaatttgattcaaactacagctttttcagattcagtagcatcaat |
20433277 |
T |
|
| Q |
101 |
aaatacaaccctaaagggatcattttcagttgggaccaaacgccatccattctcatctctatacctcccaatatcactacaagcaccaggtggagcactg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20433278 |
aaatacaaccctaaagggatcattttcagttgggaccaaacgccatccattctcatctctatacctcccaatatcactacatgcaccaggtggagcactg |
20433377 |
T |
|
| Q |
201 |
aacaatggacaatacacaagcttgtatg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
20433378 |
aacaatggacaatacacaagcttgtatg |
20433405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University