View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1255_high_27 (Length: 221)
Name: NF1255_high_27
Description: NF1255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1255_high_27 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 43 - 221
Target Start/End: Complemental strand, 19172626 - 19172448
Alignment:
| Q |
43 |
aatactacacagaatggttcaacacactcaagaacaatcacctcccattactccgtcgttctatctccggcgcctccttaaccctcctctcaactcacgt |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19172626 |
aatactacacagaatggttcaacacactcaagaacaatcacctcccattactccgtcgttctatctccggcgactccttaaccctcctctcaactcacgt |
19172527 |
T |
|
| Q |
143 |
tgagctcatccaccaacacttccaatcttactaccacaccctcgacgcagctgcaaccacagacccttctcaaatcctc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19172526 |
tgagctcatccaccaacacttccaatcttactaccacaccctcgacgcagctgcaatcacagacccttctcaaatcctc |
19172448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University