View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1255_high_28 (Length: 219)
Name: NF1255_high_28
Description: NF1255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1255_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 47419359 - 47419515
Alignment:
| Q |
1 |
tcttagcataacgttgaaacctatctctaaccaccttaagaaaaaacatctattctacctacctgttgttgcacttttgctaatgctatcctaagcatct |
100 |
Q |
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| T |
47419359 |
tcttagcataacgttgaaacctatctctaaccaccttaagaaaaaacatctattctacctacctgttgttgcacttttgctaatgctatcctaagcatct |
47419458 |
T |
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| Q |
101 |
gatcccccacaatccctttcataagccgtacaaaatgttctttgggtatttcatctc |
157 |
Q |
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| T |
47419459 |
gatcccccacaatccctttcataagccgtacaaaatgttctttgggcatttcatctc |
47419515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 47390996 - 47391152
Alignment:
| Q |
1 |
tcttagcataacgttgaaacctatctctaaccaccttaagaaaaaacatctattctacctacctgttgttgcacttttgctaatgctatcctaagcatct |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47390996 |
tcttagcataacgttgaaatctatctctaaccaccttaggaaaaatcatctattctgcctacctgttgttgcacttttgttaatgctatcctaagcatct |
47391095 |
T |
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| Q |
101 |
gatcccccacaatccctttcataagccgtacaaaatgttctttgggtatttcatctc |
157 |
Q |
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| T |
47391096 |
gatcccccacaatccctttcataagccgtacaaaatgttctttaggtatttcatctc |
47391152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 48 - 157
Target Start/End: Original strand, 47421878 - 47421987
Alignment:
| Q |
48 |
atctattctacctacctgttgttgcacttttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttgggt |
147 |
Q |
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| T |
47421878 |
atctattctacctacctgttgttgcacttttgctaatgctatcctaagcatcggatcccccacaatccctttcataagccgtacaaaatgttctttcggt |
47421977 |
T |
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| Q |
148 |
atttcatctc |
157 |
Q |
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|||||||||| |
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| T |
47421978 |
atttcatctc |
47421987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 47408183 - 47408286
Alignment:
| Q |
54 |
tctacctacctgttgttgcacttttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttgggtatttca |
153 |
Q |
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||||||||||||||| ||||||| || ||||||| |||||| |||||||||| ||||||||||||||| ||||| |||| | || ||||||| ||||||| |
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| T |
47408183 |
tctacctacctgttgctgcacttctgttaatgctttcctaatcatctgatcctccacaatccctttcaaaagccttacacactgatctttggatatttca |
47408282 |
T |
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| Q |
154 |
tctc |
157 |
Q |
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|||| |
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| T |
47408283 |
tctc |
47408286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 47421811 - 47421854
Alignment:
| Q |
1 |
tcttagcataacgttgaaacctatctctaaccaccttaagaaaa |
44 |
Q |
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| T |
47421811 |
tcttagcataacgttgaaatctatctttaaccaccttaagaaaa |
47421854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 47424609 - 47424696
Alignment:
| Q |
47 |
catctattctacctacctgttgttgcacttttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaa |
134 |
Q |
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|||||| ||||| ||||||||| ||||||| || ||||| | |||||||||| | ||||||||| |||||||||||||||||||| |
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| T |
47424609 |
catctaatctacgtacctgttggtgcacttctgttaatgttgatataagcatctgcttccccacaatgcctttcataagccgtacaaa |
47424696 |
T |
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