View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1255_high_8 (Length: 361)

Name: NF1255_high_8
Description: NF1255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1255_high_8
NF1255_high_8
[»] chr5 (3 HSPs)
chr5 (95-353)||(8527074-8527330)
chr5 (95-161)||(8533846-8533912)
chr5 (259-326)||(8532632-8532699)
[»] chr1 (1 HSPs)
chr1 (95-161)||(26325272-26325338)
[»] chr4 (1 HSPs)
chr4 (95-166)||(9441603-9441664)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 95 - 353
Target Start/End: Complemental strand, 8527330 - 8527074
Alignment:
Q  95 aaaactatatttcacttttaaatatgcattttaaaaatacttgattatcattggttgttggtgtaaacacatatccctcnnnnnnnatatttaaattcag 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||         |||||||||||||    
T  8527330 aaaactatatttcacttttaaatatgcattttaaaaatacttgattatcattggttgttggtgttaacacatatccctttttttt--tatttaaattcag 8527233  T
Q  195 aaatattttactggggtctagttcttgttgattatgtctactcacattctttccttgtctaatgagggagactgcatgattatatgatccactgttatta 294  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||     
T  8527232 aaatattttactggggtctagtttttgtttattatgtctactcacattctttccttgtctaacgagggaaactgcatgattatatgatccactgttattc 8527133  T
Q  295 attttttgtcaagaccaaagaagatagtagtaggaaatataacaaaatgcacctttgct 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8527132 attttttgtcaagaccaaagaagatagtagtaggaaatataacaaaatgcacctttgct 8527074  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 8533912 - 8533846
Alignment:
Q  95 aaaactatatttcacttttaaatatgcattttaaaaatacttgattatcattggttgttggtgtaaa 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  8533912 aaaactatatttcacttttaaatatgcattttaaaaatacttgattgtcattggttgtcggtgtaaa 8533846  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 8532699 - 8532632
Alignment:
Q  259 agggagactgcatgattatatgatccactgttattaattttttgtcaagaccaaagaagatagtagta 326  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||    
T  8532699 agggagactgcatgattatatgatccactgtaattcattttttgtcaagactaaagaagatagaagta 8532632  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 26325272 - 26325338
Alignment:
Q  95 aaaactatatttcacttttaaatatgcattttaaaaatacttgattatcattggttgttggtgtaaa 161  Q
    ||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||| ||||||||    
T  26325272 aaaactatatttcacttttaaatatgtgttttaaaaatacttgattgtcattggttgtcggtgtaaa 26325338  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 9441664 - 9441603
Alignment:
Q  95 aaaactatatttcacttttaaatatgcattttaaaaatacttgattatcattggttgttggtgtaaacacat 166  Q
    ||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||    
T  9441664 aaaactatatttcacttttaaatatgcatttt----------gattatcattggttgttggtgtaaacacat 9441603  T

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