View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1255_low_10 (Length: 391)

Name: NF1255_low_10
Description: NF1255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1255_low_10
NF1255_low_10
[»] chr7 (23 HSPs)
chr7 (275-362)||(3935052-3935139)
chr7 (276-362)||(3932813-3932899)
chr7 (275-362)||(8731175-8731262)
chr7 (275-362)||(36464212-36464299)
chr7 (276-362)||(18395411-18395497)
chr7 (276-362)||(42678571-42678657)
chr7 (275-362)||(8414489-8414576)
chr7 (276-362)||(16496953-16497039)
chr7 (276-354)||(19789193-19789272)
chr7 (276-362)||(16535135-16535221)
chr7 (276-362)||(16630441-16630527)
chr7 (278-354)||(19786887-19786964)
chr7 (194-265)||(8348424-8348495)
chr7 (195-265)||(8364437-8364505)
chr7 (276-355)||(8733495-8733575)
chr7 (195-265)||(8442640-8442710)
chr7 (195-261)||(7915481-7915549)
chr7 (278-337)||(21769071-21769130)
chr7 (96-150)||(8354916-8354970)
chr7 (276-330)||(42680808-42680862)
chr7 (276-355)||(3052310-3052387)
chr7 (278-346)||(19093846-19093912)
chr7 (275-315)||(28610267-28610308)
[»] chr3 (2 HSPs)
chr3 (275-362)||(4533231-4533318)
chr3 (276-362)||(4530934-4531020)
[»] chr5 (9 HSPs)
chr5 (276-362)||(11852175-11852261)
chr5 (275-362)||(11849916-11850003)
chr5 (276-362)||(23164254-23164340)
chr5 (274-355)||(22601007-22601089)
chr5 (276-355)||(37215558-37215638)
chr5 (276-362)||(1779222-1779303)
chr5 (276-354)||(21743719-21743797)
chr5 (276-347)||(37207998-37208070)
chr5 (276-337)||(15469197-15469258)
[»] chr4 (9 HSPs)
chr4 (276-362)||(13774250-13774336)
chr4 (276-362)||(45162278-45162364)
chr4 (275-355)||(42468438-42468518)
chr4 (276-355)||(42470768-42470847)
chr4 (276-362)||(50855771-50855857)
chr4 (279-362)||(13776546-13776630)
chr4 (276-362)||(19429076-19429163)
chr4 (278-362)||(45167170-45167254)
chr4 (276-337)||(8739501-8739562)
[»] chr2 (11 HSPs)
chr2 (276-362)||(42275556-42275642)
chr2 (276-362)||(42277782-42277868)
chr2 (276-355)||(5164151-5164230)
chr2 (282-362)||(8995076-8995156)
chr2 (276-354)||(31486990-31487069)
chr2 (282-362)||(15730013-15730093)
chr2 (275-354)||(31489274-31489354)
chr2 (276-338)||(39816089-39816151)
chr2 (275-337)||(23860126-23860188)
chr2 (284-337)||(34576612-34576665)
chr2 (286-333)||(29802105-29802152)
[»] chr8 (6 HSPs)
chr8 (275-362)||(24519152-24519239)
chr8 (276-354)||(4877098-4877176)
chr8 (276-354)||(4879426-4879504)
chr8 (276-354)||(36379465-36379544)
chr8 (276-354)||(21268120-21268199)
chr8 (275-354)||(36377180-36377259)
[»] chr1 (10 HSPs)
chr1 (275-362)||(10911449-10911536)
chr1 (276-362)||(29833076-29833162)
chr1 (276-362)||(29833960-29834046)
chr1 (276-362)||(10909205-10909292)
chr1 (276-362)||(8933549-8933635)
chr1 (276-362)||(13011795-13011881)
chr1 (276-354)||(734579-734655)
chr1 (276-355)||(2403835-2403915)
chr1 (276-355)||(2409957-2410037)
chr1 (280-322)||(419174-419216)
[»] scaffold0599 (1 HSPs)
scaffold0599 (276-362)||(1715-1801)
[»] scaffold0008 (1 HSPs)
scaffold0008 (276-362)||(88445-88531)
[»] scaffold1361 (1 HSPs)
scaffold1361 (276-362)||(53-140)
[»] scaffold0098 (1 HSPs)
scaffold0098 (276-354)||(3707-3785)
[»] scaffold1769 (1 HSPs)
scaffold1769 (195-265)||(322-392)
[»] scaffold0060 (2 HSPs)
scaffold0060 (195-265)||(69243-69313)
scaffold0060 (198-265)||(65306-65373)
[»] scaffold0050 (2 HSPs)
scaffold0050 (276-337)||(29453-29514)
scaffold0050 (276-337)||(31768-31829)
[»] chr6 (1 HSPs)
chr6 (278-337)||(20642300-20642359)
[»] scaffold0045 (2 HSPs)
scaffold0045 (275-337)||(64082-64142)
scaffold0045 (275-337)||(71414-71474)
[»] scaffold0312 (1 HSPs)
scaffold0312 (280-322)||(11355-11397)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 8e-40; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 275 - 362
Target Start/End: Complemental strand, 3935139 - 3935052
Alignment:
Q  275 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3935139 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 3935052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 276 - 362
Target Start/End: Complemental strand, 3932899 - 3932813
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3932899 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 3932813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 8731175 - 8731262
Alignment:
Q  275 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8731175 ttggctcagggacaaaaggaaaggtagataaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 8731262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 36464212 - 36464299
Alignment:
Q  275 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36464212 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 36464299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 276 - 362
Target Start/End: Complemental strand, 18395497 - 18395411
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18395497 tggcttagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 18395411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 276 - 362
Target Start/End: Original strand, 42678571 - 42678657
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42678571 tggctcagggacaaaaggaaaggtagagaaaataaagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 42678657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 8414489 - 8414576
Alignment:
Q  275 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  8414489 ttggctcagggacaaaaggaaaggtagagaaaatagaaaaacactctaatattctcaaagaaaagttatattatttgaatgattcaat 8414576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 276 - 362
Target Start/End: Original strand, 16496953 - 16497039
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  16496953 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttaaatgattcaat 16497039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 276 - 354
Target Start/End: Complemental strand, 19789272 - 19789193
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaa-gaaaagttatattacttgaat 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19789272 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaat 19789193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 276 - 362
Target Start/End: Original strand, 16535135 - 16535221
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  16535135 tggctcggggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttaaatgattcaat 16535221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 276 - 362
Target Start/End: Complemental strand, 16630527 - 16630441
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  16630527 tggctcggggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttaaatgattcaat 16630441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 278 - 354
Target Start/End: Complemental strand, 19786964 - 19786887
Alignment:
Q  278 gctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaa-gaaaagttatattacttgaat 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19786964 gctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaat 19786887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 194 - 265
Target Start/End: Complemental strand, 8348495 - 8348424
Alignment:
Q  194 atatgagttggtcttgagattttgaaatttagcatgttcggcactctacaattcgagacagttgaaagaata 265  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  8348495 atatgagttggtcttgagattttgaagtttagcatgttcggaactctacaattcgagacagttgaaagaata 8348424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 195 - 265
Target Start/End: Complemental strand, 8364505 - 8364437
Alignment:
Q  195 tatgagttggtcttgagattttgaaatttagcatgttcggcactctacaattcgagacagttgaaagaata 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  8364505 tatgagttggtcttgagattttgaaatttagcatgttcggcactctacaattc--gacagttgaaagaata 8364437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 276 - 355
Target Start/End: Original strand, 8733495 - 8733575
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatattacttgaatg 355  Q
    |||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||    
T  8733495 tggctcagggacaaaagagaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatg 8733575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 195 - 265
Target Start/End: Complemental strand, 8442710 - 8442640
Alignment:
Q  195 tatgagttggtcttgagattttgaaatttagcatgttcggcactctacaattcgagacagttgaaagaata 265  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||| ||||| ||| |||||||||||||    
T  8442710 tatgagttggtcttcagattttgaaatttagcatgttaggcactctagaattcaagatagttgaaagaata 8442640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 195 - 261
Target Start/End: Original strand, 7915481 - 7915549
Alignment:
Q  195 tatgagttggtcttgagattttgaaatttagcatgttcggcactc--tacaattcgagacagttgaaag 261  Q
    |||||||||||||||||||||||||||||||||||||| ||||||  |||||||| ||||| |||||||    
T  7915481 tatgagttggtcttgagattttgaaatttagcatgttctgcactctatacaattcaagacaattgaaag 7915549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 278 - 337
Target Start/End: Original strand, 21769071 - 21769130
Alignment:
Q  278 gctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaa 337  Q
    |||||||||  |||||||||||||||||||||||||||| || |||||||||||||||||    
T  21769071 gctcagggatgaaaggaaaggtagagaaaatagagaaactctttaatattctcaaagaaa 21769130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 8354970 - 8354916
Alignment:
Q  96 tttggctggtttttacttattgttgcatactacacatcctcttaactaagctata 150  Q
    ||||||||||||||||||||| |||| |||||||||| |||||||||||||||||    
T  8354970 tttggctggtttttacttattattgcttactacacattctcttaactaagctata 8354916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 276 - 330
Target Start/End: Complemental strand, 42680862 - 42680808
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctc 330  Q
    ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  42680862 tggctgaggaacaaaatgaaaggtagagaaaatagagaaacactctaatattctc 42680808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 355
Target Start/End: Complemental strand, 3052387 - 3052310
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatg 355  Q
    ||||| |||||||||||||| ||||||||||||| ||||  |||||| ||||||||||||||  |||||||| |||||||    
T  3052387 tggctgagggacaaaaggaatggtagagaaaataaagaa--actctattattctcaaagaaagtttatattatttgaatg 3052310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 19093846 - 19093912
Alignment:
Q  278 gctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatatt 346  Q
    |||||||| |||||||| |||||||||||||  |||||| ||||||||||||||||||||  |||||||    
T  19093846 gctcagggtcaaaaggagaggtagagaaaat--agaaactctctaatattctcaaagaaagtttatatt 19093912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 28610267 - 28610308
Alignment:
Q  275 ttggctcagggacaaaaggaaagg-tagagaaaatagagaaa 315  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  28610267 ttggctcagggacaaaaggaaaggttagagaaaataaagaaa 28610308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 275 - 362
Target Start/End: Complemental strand, 4533318 - 4533231
Alignment:
Q  275 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4533318 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 4533231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 276 - 362
Target Start/End: Complemental strand, 4531020 - 4530934
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4531020 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 4530934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 276 - 362
Target Start/End: Original strand, 11852175 - 11852261
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11852175 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 11852261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 11849916 - 11850003
Alignment:
Q  275 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  11849916 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattatttgaatgattcaat 11850003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 276 - 362
Target Start/End: Original strand, 23164254 - 23164340
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23164254 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 23164340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 274 - 355
Target Start/End: Complemental strand, 22601089 - 22601007
Alignment:
Q  274 gttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatattacttgaatg 355  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||    
T  22601089 gttggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatg 22601007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 276 - 355
Target Start/End: Complemental strand, 37215638 - 37215558
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatattacttgaatg 355  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||    
T  37215638 tggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatg 37215558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 276 - 362
Target Start/End: Original strand, 1779222 - 1779303
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    |||||||||||||||||||||     ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1779222 tggctcagggacaaaaggaaa-----agaaaatagaggaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 1779303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 276 - 354
Target Start/End: Complemental strand, 21743797 - 21743719
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaat 354  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||| ||||||    
T  21743797 tggcccagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaagtttatattatttgaat 21743719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 276 - 347
Target Start/End: Complemental strand, 37208070 - 37207998
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatatta 347  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||| ||||||||    
T  37208070 tggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcgaagaaaagattatatta 37207998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 276 - 337
Target Start/End: Complemental strand, 15469258 - 15469197
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaa 337  Q
    ||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||    
T  15469258 tggctcagggacaaaaggaaaggtaaaaaaaatagagaaactctctaatattctcaaagaaa 15469197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 276 - 362
Target Start/End: Complemental strand, 13774336 - 13774250
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13774336 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 13774250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 276 - 362
Target Start/End: Complemental strand, 45162364 - 45162278
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45162364 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 45162278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 42468438 - 42468518
Alignment:
Q  275 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatg 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42468438 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatg 42468518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 276 - 355
Target Start/End: Original strand, 42470768 - 42470847
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatg 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42470768 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatg 42470847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 276 - 362
Target Start/End: Original strand, 50855771 - 50855857
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||    
T  50855771 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcgaggaaaagttatattacttgaatgattcaat 50855857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 279 - 362
Target Start/End: Complemental strand, 13776630 - 13776546
Alignment:
Q  279 ctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaa-gaaaagttatattacttgaatgaatcaat 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  13776630 ctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaacgaaaagttatattacttgaatgattcaat 13776546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 276 - 362
Target Start/End: Original strand, 19429076 - 19429163
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagt-tatattacttgaatgaatcaat 362  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||    
T  19429076 tggctcacggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaagtatatattacttgaatgattcaat 19429163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 278 - 362
Target Start/End: Complemental strand, 45167254 - 45167170
Alignment:
Q  278 gctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    ||||| |||||||||||||| ||  ||||||||||||||||||||||||||| ||| ||||||||||||| |||||||| |||||    
T  45167254 gctcatggacaaaaggaaagttaccgaaaatagagaaacactctaatattcttaaaaaaaagttatattatttgaatgattcaat 45167170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 337
Target Start/End: Complemental strand, 8739562 - 8739501
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaa 337  Q
    ||||||||||| ||||||||||  |||||||||| |||||| ||||||| ||||||| ||||    
T  8739562 tggctcagggataaaaggaaagaaagagaaaataaagaaactctctaatgttctcaaggaaa 8739501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 276 - 362
Target Start/End: Original strand, 42275556 - 42275642
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42275556 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 42275642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 276 - 362
Target Start/End: Original strand, 42277782 - 42277868
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42277782 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 42277868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 276 - 355
Target Start/End: Original strand, 5164151 - 5164230
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatg 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5164151 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatg 5164230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 282 - 362
Target Start/End: Original strand, 8995076 - 8995156
Alignment:
Q  282 agggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  8995076 agggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaagttatattacttgaatgattcaat 8995156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 276 - 354
Target Start/End: Complemental strand, 31487069 - 31486990
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaa-gaaaagttatattacttgaat 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31487069 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaat 31486990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 15730093 - 15730013
Alignment:
Q  282 agggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||    
T  15730093 agggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaataaaagttatattacttgaatgattcaat 15730013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 275 - 354
Target Start/End: Complemental strand, 31489354 - 31489274
Alignment:
Q  275 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaa-gaaaagttatattacttgaat 354  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31489354 ttggcttagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaat 31489274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 39816089 - 39816151
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaa 338  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39816089 tggctcacggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaa 39816151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 23860188 - 23860126
Alignment:
Q  275 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaa 337  Q
    |||||||||||||||||||||| | | ||||||||||||||| ||||||||||||||||||||    
T  23860188 ttggctcagggacaaaaggaaaagcatagaaaatagagaaactctctaatattctcaaagaaa 23860126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 34576612 - 34576665
Alignment:
Q  284 ggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaa 337  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  34576612 ggacaaaaggtaaggtagagaaaatagagaaactctctaatattctcaaagaaa 34576665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 333
Target Start/End: Complemental strand, 29802152 - 29802105
Alignment:
Q  286 acaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaa 333  Q
    |||||| ||||||||||||||||||  |||| ||||||||||||||||    
T  29802152 acaaaatgaaaggtagagaaaatagtaaaactctctaatattctcaaa 29802105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 24519152 - 24519239
Alignment:
Q  275 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  24519152 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttgaatgattcaat 24519239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 276 - 354
Target Start/End: Complemental strand, 4877176 - 4877098
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaat 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4877176 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaggaaaagttatattacttgaat 4877098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 276 - 354
Target Start/End: Complemental strand, 4879504 - 4879426
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaat 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4879504 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaggaaaagttatattacttgaat 4879426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 276 - 354
Target Start/End: Original strand, 36379465 - 36379544
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaa-gaaaagttatattacttgaat 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36379465 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaat 36379544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 276 - 354
Target Start/End: Original strand, 21268120 - 21268199
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaa-gaaaagttatattacttgaat 354  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21268120 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaat 21268199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 275 - 354
Target Start/End: Original strand, 36377180 - 36377259
Alignment:
Q  275 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaa-gaaaagttatattacttgaat 354  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36377180 ttggctcaaggacaaa-ggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaat 36377259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 275 - 362
Target Start/End: Complemental strand, 10911536 - 10911449
Alignment:
Q  275 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10911536 ttggctcagggacaaaaggaaaggtagataaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 10911449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 276 - 362
Target Start/End: Original strand, 29833076 - 29833162
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29833076 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 29833162  T

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Target: chr1; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 276 - 362
Target Start/End: Complemental strand, 29834046 - 29833960
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  29834046 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaaggattcaat 29833960  T

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Target: chr1; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 276 - 362
Target Start/End: Complemental strand, 10909292 - 10909205
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaa-gaaaagttatattacttgaatgaatcaat 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  10909292 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaacgaaaagttatattacttgaatgattcaat 10909205  T

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Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 276 - 362
Target Start/End: Original strand, 8933549 - 8933635
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  8933549 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatattttcaaagaaaagttatattacttgaatgattcaat 8933635  T

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Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 276 - 362
Target Start/End: Complemental strand, 13011881 - 13011795
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  13011881 tggctcaggaacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattatttgaatgattcaat 13011795  T

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Target: chr1; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 276 - 354
Target Start/End: Original strand, 734579 - 734655
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaat 354  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||    
T  734579 tggctcagggacaaaaggaaaggtagagaaaatagagaaaca--ctaatattctcaaggaaaagttatattacttgaat 734655  T

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Target: chr1; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 276 - 355
Target Start/End: Original strand, 2403835 - 2403915
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattacttgaatg 355  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| |||||||    
T  2403835 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatg 2403915  T

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Target: chr1; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 276 - 355
Target Start/End: Original strand, 2409957 - 2410037
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattacttgaatg 355  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||  |||||||| |||||||    
T  2409957 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctataatattctcaaagaaaatattatattatttgaatg 2410037  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 322
Target Start/End: Original strand, 419174 - 419216
Alignment:
Q  280 tcagggacaaaaggaaaggtagagaaaatagagaaacactcta 322  Q
    |||| |||||||| || ||||||||||||||||||||||||||    
T  419174 tcagagacaaaagaaatggtagagaaaatagagaaacactcta 419216  T

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Target: scaffold0599 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 276 - 362
Target Start/End: Complemental strand, 1801 - 1715
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  1801 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatatcctcaaagaaaagttatattacttgaatgattcaat 1715  T

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Target: scaffold0008 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 276 - 362
Target Start/End: Complemental strand, 88531 - 88445
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgaatcaat 362  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  88531 tggctcagggacaaaaggaaaggtagagaaaatagagaaagactctaatattctcaaagaaaagttatattacttgaatgattcaat 88445  T

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Target: scaffold1361 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 276 - 362
Target Start/End: Complemental strand, 140 - 53
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaa-gaaaagttatattacttgaatgaatcaat 362  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||    
T  140 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactttaatattctcaaacgaaaagttatattacttgaatgattcaat 53  T

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Target: scaffold0098 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 276 - 354
Target Start/End: Original strand, 3707 - 3785
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaat 354  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||  |||||||| ||||||    
T  3707 tggctcagggacaaaaggaaaggtagagaaaatagagtaactctctaatattctcaaagaaagtttatattatttgaat 3785  T

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Target: scaffold1769 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold1769
Description:

Target: scaffold1769; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 322 - 392
Alignment:
Q  195 tatgagttggtcttgagattttgaaatttagcatgttcggcactctacaattcgagacagttgaaagaata 265  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| |||||||||||||    
T  322 tatgagttggtcttgagattttgaaatttagcatgttaggcactctagaattcaagatagttgaaagaata 392  T

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Target: scaffold0060 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 69243 - 69313
Alignment:
Q  195 tatgagttggtcttgagattttgaaatttagcatgttcggcactctacaattcgagacagttgaaagaata 265  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| |||||||||||||    
T  69243 tatgagttggtcttgagattttgaaatttagcatgttaggcactctagaattcaagatagttgaaagaata 69313  T

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Target: scaffold0060; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 265
Target Start/End: Original strand, 65306 - 65373
Alignment:
Q  198 gagttggtcttgagattttgaaatttagcatgttcggcactctacaattcgagacagttgaaagaata 265  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||||||  |||||||||||||||||    
T  65306 gagttggttttgagattttgaaatatagcatgttaggcactctacaatttaagacagttgaaagaata 65373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 276 - 337
Target Start/End: Complemental strand, 29514 - 29453
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaa 337  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  29514 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatgttctcaaagaaa 29453  T

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Target: scaffold0050; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 276 - 337
Target Start/End: Complemental strand, 31829 - 31768
Alignment:
Q  276 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaa 337  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  31829 tggctcaaggacaaaaggaaaggtagagaaaatagagaaactctctaatgttctcaaagaaa 31768  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 278 - 337
Target Start/End: Complemental strand, 20642359 - 20642300
Alignment:
Q  278 gctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaa 337  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||    
T  20642359 gctcagggacaaaatgaaaggtagagaaaatagagaaattctctaatattctcaaagaaa 20642300  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 64142 - 64082
Alignment:
Q  275 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaa 337  Q
    |||| |||| ||||||| |||||||| |||||||||||||  || ||||||||||||||||||    
T  64142 ttggatcagagacaaaatgaaaggtaaagaaaatagagaa--accctaatattctcaaagaaa 64082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 71474 - 71414
Alignment:
Q  275 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaa 337  Q
    |||| |||| ||||||| |||||||| |||||||||||||  || ||||||||||||||||||    
T  71474 ttggatcagagacaaaatgaaaggtaaagaaaatagagaa--accctaatattctcaaagaaa 71414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 322
Target Start/End: Complemental strand, 11397 - 11355
Alignment:
Q  280 tcagggacaaaaggaaaggtagagaaaatagagaaacactcta 322  Q
    |||| |||||||| || ||||||||||||||||||||||||||    
T  11397 tcagagacaaaagaaatggtagagaaaatagagaaacactcta 11355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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