View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1255_low_12 (Length: 375)
Name: NF1255_low_12
Description: NF1255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1255_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 347
Target Start/End: Original strand, 50731439 - 50731790
Alignment:
| Q |
11 |
cagagatgtcgtaagtattgaatatggaaatactgaaaaacacaggtgaaaattaatattcaatattctatatataggataaaataaaatgatgaattaa |
110 |
Q |
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| T |
50731439 |
cagagatgtcgtaagtattgaatatggaaatactgaaaaacacaggtgaaaattaatattcaatattctatatataggataaaataaaatgatgaattaa |
50731538 |
T |
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| Q |
111 |
ggaatcaatcaaattgtagtgcttacttgcaacccttccattctattttactgtt---------------tgcatgaatagataactgaacatctaccct |
195 |
Q |
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| T |
50731539 |
ggaatcaatcaaattgtagtgcttacttgcaacccttccattctattttactgtttcctcttttattgtttgcatgaatagataactgaacatctaccct |
50731638 |
T |
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| Q |
196 |
attaaaaaattcttctgcatatatggaataacaagggtcatagcccccaaaacttctcatcctcttcattctataaccatttttcacctgcaagacccaa |
295 |
Q |
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| T |
50731639 |
attaaaaaattcttctgcatatatggaataacaagggtcatagcccccaaaacttctcatcctcttcattctataaccatttttcacctgcaagacccaa |
50731738 |
T |
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| Q |
296 |
acttaaactactttttgatctatattcaaactggcaactgcatgcatatatt |
347 |
Q |
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| T |
50731739 |
aattaaactactttttgatcaatattcaaactggcaactgcatgcatatatt |
50731790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 164 - 288
Target Start/End: Original strand, 50724236 - 50724360
Alignment:
| Q |
164 |
tttgcatgaatagataactgaacatctaccctattaaaaaattcttctgcatatatggaataacaagggtcatagcccccaaaacttctcatcctcttca |
263 |
Q |
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| T |
50724236 |
tttgcatgaaaagatgattgaacatctatcctgttgaaaaattcttctgcatatgttgaataacaaggatcatagcccccaaaaattctcatcctcttca |
50724335 |
T |
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| Q |
264 |
ttctataaccatttttcacctgcaa |
288 |
Q |
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| T |
50724336 |
atctataatcatttttcacctgcaa |
50724360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 50724175 - 50724213
Alignment:
| Q |
118 |
atcaaattgtagtgcttacttgcaacccttccattctat |
156 |
Q |
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| T |
50724175 |
atcaaattgtagtgcttacttgcaaaccttccatgctat |
50724213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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