View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1255_low_15 (Length: 338)
Name: NF1255_low_15
Description: NF1255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1255_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 4e-97; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 96 - 311
Target Start/End: Original strand, 6288134 - 6288348
Alignment:
| Q |
96 |
gatgcagccacaaccaccgacgattacgaatgaaattttttgatgtctcatcttagatcgtggttgtgaacactttttcaatcctcgtttcaactactga |
195 |
Q |
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| T |
6288134 |
gatgcagctacaaccactgacaatt-cacatgaaattttttgatgtctcatcttagatcgtggttgtgaacactttttcaatcctcgtttcaactactga |
6288232 |
T |
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| Q |
196 |
atatatttccaggatctaatgttttgtaaggttaccttttaagtagatcattaggcagaccttgatcggtgaaaacccagtctttatatattaccgcaga |
295 |
Q |
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| T |
6288233 |
atatatttccaggatctaatgttttgtaaggttaccttttaagtagatcattaggcaaaccttgatcggtgaaaacccagtctttatatattaccgcaga |
6288332 |
T |
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| Q |
296 |
caattctagagaataa |
311 |
Q |
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| T |
6288333 |
caattctaaagaataa |
6288348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 144 - 311
Target Start/End: Original strand, 6273931 - 6274098
Alignment:
| Q |
144 |
catcttagatcgtggttgtgaacactttttcaatcctcgtttcaactactgaatatatttccaggatctaatgttttgtaaggttaccttttaagtagat |
243 |
Q |
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| T |
6273931 |
catcttagattgaggttgcgaacaaattttcaatcctctttttaactattgaatatatgtctaggatctaatgttttttaaggttaccttttgagtagat |
6274030 |
T |
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| Q |
244 |
cattaggcagaccttgatcggtgaaaacccagtctttatatattaccgcagacaattctagagaataa |
311 |
Q |
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| T |
6274031 |
cattaggcaaaccttgctctttaaaattccaatccttatataatacagcagacaactctagagaataa |
6274098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 205 - 311
Target Start/End: Original strand, 6331371 - 6331477
Alignment:
| Q |
205 |
caggatctaatgttttgtaaggttaccttttaagtagatcattaggcagaccttgatcggtgaaaacccagtctttatatattaccgcagacaattctag |
304 |
Q |
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| T |
6331371 |
caggatctaatattttgtaaggttaccttttcagtaaatcattaggaagaccgtgctctatgaaaacccaatccttatataatagagcagacaattctaa |
6331470 |
T |
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| Q |
305 |
agaataa |
311 |
Q |
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| T |
6331471 |
agaataa |
6331477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 309
Target Start/End: Original strand, 6320882 - 6320968
Alignment:
| Q |
223 |
aaggttaccttttaagtagatcattaggcagaccttgatcggtgaaaacccagtctttatatattaccgcagacaattctagagaat |
309 |
Q |
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| T |
6320882 |
aaggttaccttttaagtagatcattaggtagtccttgatctgggaaaacccaatccttatataatacagaagacagttctatagaat |
6320968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 6362670 - 6362732
Alignment:
| Q |
212 |
taatgttttgtaaggttaccttttaagtagatcattaggcagaccttgatcggtgaaaaccca |
274 |
Q |
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| T |
6362670 |
taatgttttgtaaggttaccttttgattagatcattaggtaggccttgctcagtgaaaaccca |
6362732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 7458564 - 7458617
Alignment:
| Q |
216 |
gttttgtaaggttaccttttaagtagatcattaggcagaccttgatcggtgaaa |
269 |
Q |
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| T |
7458564 |
gttttgtaaggttaccttttgattagatcattaggaagtccttgctcggtgaaa |
7458617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 274
Target Start/End: Original strand, 6423578 - 6423643
Alignment:
| Q |
209 |
atctaatgttttgtaaggttaccttttaagtagatcattaggcagaccttgatcggtgaaaaccca |
274 |
Q |
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| T |
6423578 |
atctaatgctttgtaatatcaccttttgagtagatcattaggtagcccttgctcagtgaaaaccca |
6423643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 7470966 - 7471019
Alignment:
| Q |
216 |
gttttgtaaggttaccttttaagtagatcattaggcagaccttgatcggtgaaa |
269 |
Q |
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| T |
7470966 |
gttttgtaaggttaccttttgattagatcattaggaagtccttgctcagtgaaa |
7471019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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