View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1255_low_16 (Length: 336)
Name: NF1255_low_16
Description: NF1255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1255_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 7320282 - 7320474
Alignment:
| Q |
1 |
gaagacacagacatgtacaaccacattgtattaggaaccttgttgccacagttcttgtgggttccacttccaagattcttccaaacatggcttcgaaact |
100 |
Q |
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| T |
7320282 |
gaagacacagacatgtacaaccacattgtattaggaaccttgttgccacagttcttgtgggttccacttccaagattcttccaaacatggcttcgaaact |
7320381 |
T |
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| Q |
101 |
acattagtggtgttctactttacttcatttctggtttcttatggtccttctacatttactattggaaacaaaatgtttatgtccctaaaggtg |
193 |
Q |
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| T |
7320382 |
acattagtggtgttctactttacttcatttcttgtttcttatggtccttctacatttactattggaaacaaaatgtttatgtccctaaaggtg |
7320474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 7304280 - 7304471
Alignment:
| Q |
1 |
gaagacacagacatgtacaaccacattgtattaggaaccttgttgccacagttcttgtgggttccacttccaagattcttccaaacatggcttcgaaact |
100 |
Q |
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| T |
7304280 |
gaagacacaaacatgtacaaccacattgtattaggaaccttgttaccacactacttgtgggttccacttccaagattcttccaaagatggcttcgaaact |
7304379 |
T |
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| Q |
101 |
acattagtggtgttctactttacttcatttctggtttcttatggtccttctacatttactattggaaacaaaatgtttatgtccctaaaggt |
192 |
Q |
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| T |
7304380 |
acgttggtgctgtcctactttacttcatttctggtttcttatggtccttctacatttactattggaaacgcaatgtttatcttcctaaaggt |
7304471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 7302267 - 7302458
Alignment:
| Q |
1 |
gaagacacagacatgtacaaccacattgtattaggaaccttgttgccacagttcttgtgggttccacttccaagattcttccaaacatggcttcgaaact |
100 |
Q |
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| T |
7302267 |
gaagacacaaacatgtacaaccacgttgtattaggaaccttgttaccacaatacttgtgggtgctactcccacggttcttccaaacatggcttcgaaact |
7302366 |
T |
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| Q |
101 |
acattagtggtgttctactttacttcatttctggtttcttatggtccttctacatttactattggaaacaaaatgtttatgtccctaaaggt |
192 |
Q |
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| T |
7302367 |
acgttggtgctgtccttctttacttcatttctggttttttatggtccttctacatttaccattggaaacagaatgtttatgtccctaaaggt |
7302458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 7281824 - 7282016
Alignment:
| Q |
1 |
gaagacacagacatgtacaaccacattgtattaggaaccttgttgccacagttcttgtgggttccacttccaagattcttccaaacatggcttcgaaact |
100 |
Q |
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| T |
7281824 |
gaagacacagatttctacaacagcattttgttgggtaccttgttacctcagtttttgtgggtcccacttccaaggttcttccaaacatggcttcgtaact |
7281923 |
T |
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| Q |
101 |
acattagtggtgttctactttacttcatttctggtttcttatggtccttctacatttactattggaaacaaaatgtttatgtccctaaaggtg |
193 |
Q |
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| T |
7281924 |
acattggtggtcttctactttacttcatttctggtttcttttggtccttttacatttactgttggaaacgcaatgtttatcttcctaaaggtg |
7282016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 7304896 - 7305005
Alignment:
| Q |
77 |
tcttccaaacatggcttcgaaactacattagtggtgttctactttacttcatttctggtttcttatggtccttctacatttactattggaaacaaaatgt |
176 |
Q |
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| T |
7304896 |
tcttacaaacatggcttccaaacttcattggtggtgtctttctttactttatttatggtttcttatggtccttgttcatttactattgggagcacaatgt |
7304995 |
T |
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| Q |
177 |
ttatgtccct |
186 |
Q |
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| T |
7304996 |
ttatgtccct |
7305005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 326
Target Start/End: Original strand, 7320582 - 7320611
Alignment:
| Q |
297 |
taataaatttgtgtttatttcgtattcatc |
326 |
Q |
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| T |
7320582 |
taataaatttgtgtttatttcgtattcatc |
7320611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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