View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1255_low_19 (Length: 320)

Name: NF1255_low_19
Description: NF1255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1255_low_19
NF1255_low_19
[»] chr8 (11 HSPs)
chr8 (97-320)||(2058893-2059116)
chr8 (97-320)||(2051832-2052055)
chr8 (100-320)||(2055689-2055909)
chr8 (101-305)||(2029714-2029918)
chr8 (101-310)||(1948115-1948324)
chr8 (101-305)||(2034632-2034836)
chr8 (101-293)||(10769373-10769565)
chr8 (101-300)||(2038715-2038914)
chr8 (101-300)||(2047958-2048157)
chr8 (189-276)||(2023297-2023384)
chr8 (130-235)||(2030879-2030984)
[»] chr4 (1 HSPs)
chr4 (101-275)||(48904895-48905069)
[»] chr2 (4 HSPs)
chr2 (101-275)||(28734921-28735095)
chr2 (187-275)||(28699507-28699595)
chr2 (195-284)||(28742148-28742237)
chr2 (102-135)||(28782875-28782908)
[»] chr1 (2 HSPs)
chr1 (98-144)||(16425472-16425518)
chr1 (98-144)||(16441757-16441803)


Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 97 - 320
Target Start/End: Complemental strand, 2059116 - 2058893
Alignment:
Q  97 agaagtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcat 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2059116 agaagtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcat 2059017  T
Q  197 gcaacagatattcttggaccaacttgattggcaattactctatgtacaacactcttgaatttgtcatttgttataagctacaattcaaacaatcaaataa 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2059016 gcaacagatattcttggaccaacttgattggcaattactctatgtacaacactcttgaatttgtcatttgttataagctacaattcaaacaatcaaataa 2058917  T
Q  297 ttagatataagtttacacctatta 320  Q
    ||||||||| ||||||||||||||    
T  2058916 ttagatatatgtttacacctatta 2058893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 97 - 320
Target Start/End: Complemental strand, 2052055 - 2051832
Alignment:
Q  97 agaagtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcat 196  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||| |||||||||||||| ||| |||||||||||||||||    
T  2052055 agaagtttctctgtatttgggaggattgtcttctgatagcagttccttcataggtccatagagctttgaagatgctttaagtgctgtggagaaaaagcat 2051956  T
Q  197 gcaacagatattcttggaccaacttgattggcaattactctatgtacaacactcttgaatttgtcatttgttataagctacaattcaaacaatcaaataa 296  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  2051955 gcaacggatattcttggaccaacttgatttgcaagtactctatgtacaacactcttgaatttgtcatttgtaataagctacaattcaaacaaacaaataa 2051856  T
Q  297 ttagatataagtttacacctatta 320  Q
    |||| | || ||||||| ||||||    
T  2051855 ttagttgtatgtttacatctatta 2051832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 100 - 320
Target Start/End: Complemental strand, 2055909 - 2055689
Alignment:
Q  100 agtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcatgca 199  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| || |||||||||||||||    
T  2055909 agtttctttgtatttaggaggattgtcttctgataacagttccttcattggtccatagagctttgaggatgctttaagtcccgtcgagaaaaagcatgca 2055810  T
Q  200 acagatattcttggaccaacttgattggcaattactctatgtacaacactcttgaatttgtcatttgttataagctacaattcaaacaatcaaataatta 299  Q
    |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||    
T  2055809 acagatattcttggaccaactgtattggcaagtactctatgtacaacactcttgaatttgtcatttgttataagctacagttcaaacaaacaaagaatta 2055710  T
Q  300 gatataagtttacacctatta 320  Q
    | |||  ||||||| ||||||    
T  2055709 gttatgtgtttacatctatta 2055689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 101 - 305
Target Start/End: Complemental strand, 2029918 - 2029714
Alignment:
Q  101 gtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcatgcaa 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||| ||||   | || ||||||||||||||||||||||    
T  2029918 gtttctctgtatttgggaggattgttttctgataatagttccttcataggtccatagagctttgacgatggcctaaggcctgtggagaaaaagcatgcaa 2029819  T
Q  201 cagatattcttggaccaacttgattggcaattactctatgtacaacactcttgaatttgtcatttgttataagctacaattcaaacaatcaaataattag 300  Q
    ||||||||||||||||||||||||| |||| |||||||||| |||||||||||||| | ||||||||||||||||||||   |||||| |||||||||||    
T  2029818 cagatattcttggaccaacttgatttgcaactactctatgttcaacactcttgaatctatcatttgttataagctacaaggtaaacaaacaaataattag 2029719  T
Q  301 atata 305  Q
     ||||    
T  2029718 ttata 2029714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 101 - 310
Target Start/End: Original strand, 1948115 - 1948324
Alignment:
Q  101 gtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcatgcaa 200  Q
    |||||||| ||||||| |||||| | ||||||||||||||||||||| ||||||||||| ||||| ||||   | || ||||| || |||||||||||||    
T  1948115 gtttctctatatttggaaggattcttttctgataatagttccttcataggtccatagagctttgacgatggcctaagacctgttgaaaaaaagcatgcaa 1948214  T
Q  201 cagatattcttggaccaacttgattggcaattactctatgtacaacactcttgaatttgtcatttgttataagctacaattcaaacaatcaaataattag 300  Q
    ||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||    
T  1948215 cagatattcttggaccaacttgatttgcaactactctatgttcaacactcttgaatttgtcatttgttataagctacaaatcaaacaagaaaataattag 1948314  T
Q  301 atataagttt 310  Q
     |||| ||||    
T  1948315 ctatatgttt 1948324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 101 - 305
Target Start/End: Complemental strand, 2034836 - 2034632
Alignment:
Q  101 gtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcatgcaa 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||   | |  |||||| ||||||||||||| |    
T  2034836 gtttctctgtatttaggaggattgtcttctgataatagttcctttataggtccatagagctttgaggatgacctaatacctgtgcagaaaaagcatgcca 2034737  T
Q  201 cagatattcttggaccaacttgattggcaattactctatgtacaacactcttgaatttgtcatttgttataagctacaattcaaacaatcaaataattag 300  Q
    ||||||||||||| ||||||| ||| |||| |||||| ||| |||||||||||||| |||||||||||||||||||||||| || ||| |||||||||||    
T  2034736 cagatattcttgggccaacttcatttgcaactactctgtgttcaacactcttgaatctgtcatttgttataagctacaattgaagcaaacaaataattag 2034637  T
Q  301 atata 305  Q
     ||||    
T  2034636 ttata 2034632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 101 - 293
Target Start/End: Complemental strand, 10769565 - 10769373
Alignment:
Q  101 gtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcatgcaa 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||   |  | || ||| ||||||| |||||||    
T  10769565 gtttctctgtatatgggaggattgtcttctgataatagttcctttataggtccatagagctttgaggatgacctatgaccggtgcagaaaaaacatgcaa 10769466  T
Q  201 cagatattcttggaccaacttgattggcaattactctatgtacaacactcttgaatttgtcatttgttataagctacaattcaaacaatcaaa 293  Q
    ||||||||||||||||||| | ||| ||||  ||||| ||  | |||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  10769465 cagatattcttggaccaacattatttgcaagaactctgtgctccacactcttgaatttgtcatttgttataagctacacttcaaacaagcaaa 10769373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 101 - 300
Target Start/End: Complemental strand, 2038914 - 2038715
Alignment:
Q  101 gtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcatgcaa 200  Q
    |||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||      | |||||||||||||||||||| |    
T  2038914 gtttctctgtatttaggaggattgtcttctgataatagatcctttattggtccatagagctttgaggatgaccaatgacctgtggagaaaaagcatgcta 2038815  T
Q  201 cagatattcttggaccaacttgattggcaattactctatgtacaacactcttgaatttgtcatttgttataagctacaattcaaacaatcaaataattag 300  Q
    |||||||||  ||||||| || ||| |||| |||||| ||| |||||||||||||| ||||||||||||||||||||||   |||||| | |||||||||    
T  2038814 cagatattcgcggaccaattttattcgcaagtactctgtgttcaacactcttgaatctgtcatttgttataagctacaaggtaaacaaactaataattag 2038715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 101 - 300
Target Start/End: Complemental strand, 2048157 - 2047958
Alignment:
Q  101 gtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcatgcaa 200  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||   |    ||||| |||||||||| ||| |    
T  2048157 gtttctctgtatttaggaggattgtcttctgataatagttctttcataggtccatagagctttgaagatgacctattacctgtagagaaaaagcttgcta 2048058  T
Q  201 cagatattcttggaccaacttgattggcaattactctatgtacaacactcttgaatttgtcatttgttataagctacaattcaaacaatcaaataattag 300  Q
    |||||||||||||||||| || ||| |||| |||| | ||| ||| |||||||||| ||||||||||||||||||||||   |||||| |||||||||||    
T  2048057 cagatattcttggaccaattttatttgcaagtactttgtgttcaaaactcttgaatctgtcatttgttataagctacaagataaacaaacaaataattag 2047958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 276
Target Start/End: Complemental strand, 2023384 - 2023297
Alignment:
Q  189 aaaagcatgcaacagatattcttggaccaacttgattggcaattactctatgtacaacactcttgaatttgtcatttgttataagcta 276  Q
    |||||| |||||| |||| ||||||||| || ||||| || |  ||||| ||  ||||||||||||||||||||||||| ||||||||    
T  2023384 aaaagcttgcaactgatactcttggaccgacatgatttgctaccactctgtgctcaacactcttgaatttgtcatttgtaataagcta 2023297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 2030984 - 2030879
Alignment:
Q  130 tgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcatgcaacagatattcttggaccaacttgattggca 229  Q
    |||||||||||| || |||||| ||||||| | |||  |||   | || |||| ||||||||||||||||||||||||||||  ||||| |||||| |||    
T  2030984 tgataatagttcttttattggtacatagagctctgacaatggcctaagacctggggagaaaaagcatgcaacagatattcttacaccaatttgatttgca 2030885  T
Q  230 attact 235  Q
    | ||||    
T  2030884 actact 2030879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 101 - 275
Target Start/End: Original strand, 48904895 - 48905069
Alignment:
Q  101 gtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcatgcaa 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||  |||| |||  |||  | ||  || ||||||||||||||     
T  48904895 gtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggataatttatgaccattgtagaaaaagcatgcag 48904994  T
Q  201 cagatattcttggaccaacttgattggcaattactctatgtacaacactcttgaatttgtcatttgttataagct 275  Q
    ||||||||||||||||||||||||| |||| |||||| ||| |||||||||| || |||||||||||||||||||    
T  48904995 cagatattcttggaccaacttgatttgcaactactctgtgttcaacactcttaaacttgtcatttgttataagct 48905069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 275
Target Start/End: Original strand, 28734921 - 28735095
Alignment:
Q  101 gtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcatgcaa 200  Q
    |||||||| ||| ||||||| |||||||||||||||| |||  | || |||||||| || |||  |  |||| | |||||||    ||||||||||||||    
T  28734921 gtttctctatatctgggagggttgtcttctgataataattctgttataggtccataaagcttttcatgtgctctaagtcctgccttgaaaaagcatgcaa 28735020  T
Q  201 cagatattcttggaccaacttgattggcaattactctatgtacaacactcttgaatttgtcatttgttataagct 275  Q
    ||||||||||||||||||  | ||| || | |||||||||| |||||||||||||||| ||||||||||||||||    
T  28735021 cagatattcttggaccaatgtcatttgccagtactctatgttcaacactcttgaatttatcatttgttataagct 28735095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 28699507 - 28699595
Alignment:
Q  187 gaaaaagcatgcaacagatattcttggaccaacttgattggcaattactctatgtacaacactcttgaatttgtcatttgttataagct 275  Q
    ||||||||||||||||||||||||||||||||    ||| || | |||||||||| |||||||||||||||||||||||||||| ||||    
T  28699507 gaaaaagcatgcaacagatattcttggaccaatgccatttgccagtactctatgttcaacactcttgaatttgtcatttgttatcagct 28699595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 28742148 - 28742237
Alignment:
Q  195 atgcaacagatattcttggaccaacttgattggcaattactctatgtacaacactcttgaatttgtcatttgttataagctacaattcaa 284  Q
    |||||||||||| |||||||||||    ||| || | |||||| ||  |||||||||||||| |||||||||||||||||| || |||||    
T  28742148 atgcaacagatactcttggaccaatagtatttgctagtactctgtgctcaacactcttgaatctgtcatttgttataagctgcagttcaa 28742237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 28782875 - 28782908
Alignment:
Q  102 tttctctgtatttgggaggattgtcttctgataa 135  Q
    ||||| ||||||||||||||||||||||||||||    
T  28782875 tttctttgtatttgggaggattgtcttctgataa 28782908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 16425472 - 16425518
Alignment:
Q  98 gaagtttctctgtatttgggaggattgtcttctgataatagttcctt 144  Q
    ||||||||||| ||||| | |||||||||||| ||||||||||||||    
T  16425472 gaagtttctctatattttgcaggattgtcttcggataatagttcctt 16425518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 16441757 - 16441803
Alignment:
Q  98 gaagtttctctgtatttgggaggattgtcttctgataatagttcctt 144  Q
    ||||||||||| ||||| | |||||||||||| ||||||||||||||    
T  16441757 gaagtttctctatattttgcaggattgtcttcagataatagttcctt 16441803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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