View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1255_low_2 (Length: 511)

Name: NF1255_low_2
Description: NF1255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1255_low_2
NF1255_low_2
[»] chr5 (11 HSPs)
chr5 (25-504)||(7736845-7737323)
chr5 (392-490)||(12081896-12081994)
chr5 (371-490)||(5731919-5732039)
chr5 (37-116)||(7768105-7768181)
chr5 (430-482)||(21149730-21149782)
chr5 (371-490)||(42086315-42086435)
chr5 (414-501)||(24875322-24875409)
chr5 (423-494)||(41163512-41163582)
chr5 (371-479)||(9805003-9805112)
chr5 (433-490)||(23383645-23383702)
chr5 (430-490)||(7866569-7866629)
[»] chr4 (11 HSPs)
chr4 (373-498)||(295534-295659)
chr4 (371-484)||(4736595-4736708)
chr4 (398-471)||(14859302-14859375)
chr4 (371-482)||(14124016-14124128)
chr4 (430-490)||(53599052-53599112)
chr4 (430-490)||(5472907-5472967)
chr4 (373-490)||(21429293-21429411)
chr4 (370-490)||(29895779-29895900)
chr4 (430-490)||(1446818-1446878)
chr4 (430-490)||(20128301-20128361)
chr4 (371-490)||(38166019-38166139)
[»] chr6 (9 HSPs)
chr6 (430-494)||(12606417-12606481)
chr6 (371-490)||(3601075-3601195)
chr6 (430-490)||(21898639-21898699)
chr6 (423-494)||(10311521-10311592)
chr6 (430-483)||(13584509-13584562)
chr6 (435-480)||(34954683-34954728)
chr6 (371-490)||(19089489-19089609)
chr6 (430-483)||(32048449-32048502)
chr6 (371-490)||(6606096-6606216)
[»] chr7 (13 HSPs)
chr7 (430-498)||(23823931-23823999)
chr7 (381-490)||(42210272-42210381)
chr7 (414-490)||(1797450-1797526)
chr7 (381-490)||(17748392-17748501)
chr7 (434-490)||(16802113-16802169)
chr7 (430-482)||(29151938-29151990)
chr7 (430-490)||(43862031-43862091)
chr7 (430-490)||(4228813-4228870)
chr7 (430-491)||(365129-365190)
chr7 (430-495)||(46414660-46414725)
chr7 (371-490)||(10047875-10047995)
chr7 (392-480)||(22973967-22974055)
chr7 (371-490)||(48804673-48804793)
[»] chr2 (18 HSPs)
chr2 (381-499)||(11069856-11069974)
chr2 (430-490)||(37560160-37560220)
chr2 (430-490)||(38962750-38962810)
chr2 (434-488)||(14853430-14853484)
chr2 (430-499)||(6358210-6358279)
chr2 (430-490)||(7747261-7747321)
chr2 (430-478)||(10026675-10026723)
chr2 (430-490)||(41220622-41220682)
chr2 (430-490)||(42770710-42770770)
chr2 (423-490)||(19976859-19976926)
chr2 (430-480)||(18649085-18649135)
chr2 (392-490)||(39806906-39807004)
chr2 (381-490)||(331488-331597)
chr2 (371-499)||(25540403-25540532)
chr2 (430-483)||(39201567-39201620)
chr2 (430-490)||(10823047-10823107)
chr2 (430-490)||(16034924-16034984)
chr2 (430-490)||(41187836-41187896)
[»] chr3 (9 HSPs)
chr3 (381-490)||(29135900-29136009)
chr3 (434-498)||(41219572-41219635)
chr3 (423-490)||(3755557-3755624)
chr3 (392-480)||(928597-928685)
chr3 (430-490)||(51683014-51683074)
chr3 (381-498)||(10040536-10040652)
chr3 (430-479)||(35923683-35923732)
chr3 (430-490)||(6462399-6462459)
chr3 (430-498)||(49082803-49082871)
[»] chr8 (4 HSPs)
chr8 (430-490)||(6100463-6100523)
chr8 (430-487)||(18374004-18374061)
chr8 (437-469)||(68164-68196)
chr8 (430-490)||(10927597-10927657)
[»] chr1 (15 HSPs)
chr1 (423-490)||(45726486-45726553)
chr1 (430-492)||(44969651-44969712)
chr1 (430-480)||(45361942-45361992)
chr1 (430-490)||(5855510-5855570)
chr1 (430-490)||(16263533-16263593)
chr1 (408-484)||(31734283-31734358)
chr1 (423-490)||(12744576-12744643)
chr1 (423-490)||(12755566-12755633)
chr1 (430-499)||(13265917-13265986)
chr1 (430-499)||(34334355-34334424)
chr1 (381-453)||(2567301-2567373)
chr1 (371-454)||(8764015-8764099)
chr1 (430-478)||(33498899-33498947)
chr1 (430-498)||(41663916-41663984)
chr1 (430-498)||(49078094-49078162)
[»] scaffold0170 (1 HSPs)
scaffold0170 (392-488)||(9837-9933)
[»] scaffold0016 (1 HSPs)
scaffold0016 (433-490)||(8763-8820)


Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 25 - 504
Target Start/End: Complemental strand, 7737323 - 7736845
Alignment:
25 catcatcactacccaactaaccaatgtccaaattacgttcaccgtgttcaccatgtttgattatatttgtttgtgtctattgtgattgcactggctttct 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7737323 catcttcactacccaactaaccaatgtccaaattacgttcaccgtgttcaccatgtttgattatatttgtttgtgtctattgtgattgcactggctttct 7737224  T
125 cttttgtactaatgttttaagcaatgaagtatgtgcatgccacttgctatagtagtaaatagtgtgctacgaattatttgtatctagctaccaactaaca 224  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7737223 cttttgtattaatgttttaagcaatgaagtatgtgcatgccacttgctatagtagtaaatagtgtgctacgaattatttgtatctagctaccaactaaca 7737124  T
225 catttgagtaaatggaatgcatgaatgcgacgtcatgcccgtatggatgaggcattggtaagtgtgttgatcataaaaatataatatcccacttgaaatg 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7737123 catttgagtaaatggaatgcatgaatgcgacgtcatgcccgtatggatgaggcattggtaagtgtgttgatcataaaaatataatatcccacttgaaatg 7737024  T
325 gttagaaaacccatacttccaatgattcaaattgnnnnnnnnnnncctttcgcacc-gtttccaaccaaccaacggtggatggctaatttggctcgtaag 423  Q
    |||||||||||||||||||||||||||||| ||             |||||||||| |||||||| ||||||||||| || ||||||| || || |||||    
7737023 gttagaaaacccatacttccaatgattcaattt--ttttattttttctttcgcaccggtttccaatcaaccaacggtcgacggctaatctgacttgtaag 7736926  T
424 tagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttcttagaataatct 504  Q
    |||| | ||| |||||| |||||||||||| |||||||||||||||   | |||||||||| ||||| |||||||| ||||    
7736925 tagagatatgtgcactgaccaaacgttgtttgtcctgagaatcgaactcgatattcctcgggtacgtccttagaatgatct 7736845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 392 - 490
Target Start/End: Complemental strand, 12081994 - 12081896
Alignment:
392 accaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    ||||| |||||| | |||||| |||||||  |||||  |||||||||||||||| ||||||||  ||||||||||||| |  ||||||| |||||||||    
12081994 accaaaggtggacgactaattcggctcgtgcgtagatgcatgcgcactggccaagcgttgttccccctgagaatcgaacccagtattccccggatacgt 12081896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 490
Target Start/End: Original strand, 5731919 - 5732039
Alignment:
371 ctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaa 469  Q
    ||||||||||| ||||| ||| || || |||| | | ||||| |||||| || |||||  |||||||||||||||| |||||||| ||||| ||||||||    
5731919 ctttcgcaccggtttccgacccactaaaggtgaacgactaatctggctcatacgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaa 5732018  T
470 tctggtattcctcggatacgt 490  Q
     | |||||||| ||| |||||    
5732019 cccggtattccccgggtacgt 5732039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 7768181 - 7768105
Alignment:
37 ccaactaaccaatgtccaaattacgttcaccgtgttcaccatgtttgattatatttgtttgtgtctattgtgattgcact 116  Q
    ||||||| | |||| |||||||||||||||| |||||||||||||| |||| |||||||  | |||||||||||||||||    
7768181 ccaactaccaaatgaccaaattacgttcaccatgttcaccatgtttaatta-atttgtt--tttctattgtgattgcact 7768105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 482
Target Start/End: Complemental strand, 21149782 - 21149730
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctc 482  Q
    |||||||||||| ||||||||||||  ||||| ||||||| ||||||||||||    
21149782 catgcgcactggtcaaacgttgttccccctgaaaatcgaacctggtattcctc 21149730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 490
Target Start/End: Complemental strand, 42086435 - 42086315
Alignment:
371 ctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaa 469  Q
    ||||||||||| ||||| ||| ||||| |||||| | |||||  ||||| |  |||||  |||||||||||| ||| ||||||||  |||| ||||||||    
42086435 ctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgttccccctgggaatcgaa 42086336  T
470 tctggtattcctcggatacgt 490  Q
     | |||||||||||| |||||    
42086335 cccggtattcctcgggtacgt 42086315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 501
Target Start/End: Complemental strand, 24875409 - 24875322
Alignment:
414 ggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttcttagaataa 501  Q
    |||||||  ||||| ||||||||||||| ||||||||||||  ||| ||||||||| ||| ||||| | || ||||| ||| ||||||    
24875409 ggctcgtgcgtagagacatgcgcactggtcaaacgttgttctccctaagaatcgaacctgatattctttgggtacgtccttggaataa 24875322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 494
Target Start/End: Original strand, 41163512 - 41163582
Alignment:
423 gtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttctt 494  Q
    ||||| ||||| ||||||||||||||||||||  |||| |||||||| | |||||||| ||| |||||||||    
41163512 gtagagacatgtgcactggccaaacgttgttc-ccctgggaatcgaacccggtattccccgggtacgttctt 41163582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 479
Target Start/End: Complemental strand, 9805112 - 9805003
Alignment:
371 ctttcgcacc-gtttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaa 469  Q
    |||||||||| |||||| ||| ||||| |||||| | |||||  ||||| |  |||||  |||||||||||||||| ||||||||  |||| ||||||||    
9805112 ctttcgcacctgtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaa 9805013  T
470 tctggtattc 479  Q
     | |||||||    
9805012 cccggtattc 9805003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 490
Target Start/End: Complemental strand, 23383702 - 23383645
Alignment:
433 gcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    ||||||||||||| ||||||||  |||| |||||||| | |||||||||| |||||||    
23383702 gcgcactggccaagcgttgttccccctgggaatcgaacccggtattcctctgatacgt 23383645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 490
Target Start/End: Complemental strand, 7866629 - 7866569
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    ||||| |||||||||| |||||||| ||||  |||||||| | |||||||||||| |||||    
7866629 catgcacactggccaagcgttgttcctcctcggaatcgaacccggtattcctcgggtacgt 7866569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 373 - 498
Target Start/End: Original strand, 295534 - 295659
Alignment:
373 ttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatc 471  Q
    ||||||||| |||| |||| |||||||||||| | ||||| ||| ||||  |||||  ||||||||||||||||||||||||| | ||| ||||||||||    
295534 ttcgcaccggtttcaaacccaccaacggtggacgactaatctggttcgtgcgtagaggcatgcgcactggccaaacgttgttcct-ctgggaatcgaatc 295632  T
472 tggtattcctcggatacgttcttagaa 498  Q
    ||||||||| ||||||||| |||||||    
295633 tggtattccccggatacgtccttagaa 295659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 484
Target Start/End: Complemental strand, 4736708 - 4736595
Alignment:
371 ctttcgcaccgtttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaat 470  Q
    |||||||||||||||| ||| |||||||||||  | |||||| |||| ||| |||||  ||||| || |||||||||||||||    |||||||| |||     
4736708 ctttcgcaccgtttccgacccaccaacggtgggcgactaattcggcttgtacgtagaggcatgcacattggccaaacgttgtttccactgagaattgaac 4736609  T
471 ctggtattcctcgg 484  Q
    | ||||||||||||    
4736608 ccggtattcctcgg 4736595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 471
Target Start/End: Complemental strand, 14859375 - 14859302
Alignment:
398 ggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatc 471  Q
    |||||||| ||||| ||||||||  ||||| ||||||||||||| ||||| |||||| |||||| |||||||||    
14859375 ggtggatgactaatctggctcgtgcgtagagacatgcgcactggtcaaacattgttcctcctgaaaatcgaatc 14859302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 482
Target Start/End: Complemental strand, 14124128 - 14124016
Alignment:
371 ctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaa 469  Q
    ||||||||||| ||||||||| ||||| ||||   | |||||  |||||||  |||||  ||||||||||||||||| |||||||  |||| ||||||||    
14124128 ctttcgcaccggtttccaacccaccaatggtgagcgactaatccggctcgtgtgtagaggcatgcgcactggccaaatgttgttccccctgggaatcgaa 14124029  T
470 tctggtattcctc 482  Q
     ||||||||||||    
14124028 cctggtattcctc 14124016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 490
Target Start/End: Complemental strand, 53599112 - 53599052
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    ||||||||||||||||||||||||| ||||| |||||||| | |||||||| ||| |||||    
53599112 catgcgcactggccaaacgttgttcctcctgggaatcgaacccggtattccccgggtacgt 53599052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 490
Target Start/End: Original strand, 5472907 - 5472967
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    |||||||||||||||| |||||||   |||||||||| || |||||||||| |||||||||    
5472907 catgcgcactggccaagcgttgtttcccctgagaatcaaacctggtattccccggatacgt 5472967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 490
Target Start/End: Complemental strand, 21429411 - 21429293
Alignment:
373 ttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatc 471  Q
    ||||||||| ||||| ||| ||||| |||||| | ||| | || |||||  |||||  ||||||||||||| |||||||||||  ||| | ||||||| |    
21429411 ttcgcaccggtttccgacccaccaaaggtggacgactagtctgactcgtgcgtagaggcatgcgcactggctaaacgttgttccccctaaaaatcgaacc 21429312  T
472 tggtattcctcggatacgt 490  Q
     | ||||||||||||||||    
21429311 cgatattcctcggatacgt 21429293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 490
Target Start/End: Complemental strand, 29895900 - 29895779
Alignment:
370 cctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcga 468  Q
    |||||||||||| ||||| | | ||||| |||||| | |||||  ||||| |  |||||  ||||||||||||||||  |||||||  |||| |||||||    
29895900 cctttcgcaccggtttccgaaccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcga 29895801  T
469 atctggtattcctcggatacgt 490  Q
    | | |||||||| |||||||||    
29895800 acccggtattccccggatacgt 29895779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 490
Target Start/End: Complemental strand, 1446878 - 1446818
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    ||||||||||||||||  |||||||  |||| |||||||| | |||||||| |||||||||    
1446878 catgcgcactggccaagtgttgttccccctgggaatcgaacccggtattccccggatacgt 1446818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 490
Target Start/End: Complemental strand, 20128361 - 20128301
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    |||||||||||||||| | ||||||  ||||||||||||| |  ||||||| |||||||||    
20128361 catgcgcactggccaagcattgttccccctgagaatcgaacccagtattccccggatacgt 20128301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 490
Target Start/End: Complemental strand, 38166139 - 38166019
Alignment:
371 ctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaa 469  Q
    ||||||||||| ||||| ||| ||||| |||||  | |||||  |||||||  |||||  |||||||||||||||| ||||||||  |||| ||||| ||    
38166139 ctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagagccatgcgcactggccaagcgttgttccccctgggaatccaa 38166040  T
470 tctggtattcctcggatacgt 490  Q
     |  ||||||| |||||||||    
38166039 cccagtattccccggatacgt 38166019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 430 - 494
Target Start/End: Complemental strand, 12606481 - 12606417
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttctt 494  Q
    |||||||||||||||||||||||||  ||||  |||||||||||||||||| |||||||||||||    
12606481 catgcgcactggccaaacgttgttccccctggaaatcgaatctggtattccccggatacgttctt 12606417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 490
Target Start/End: Complemental strand, 3601195 - 3601075
Alignment:
371 ctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaa 469  Q
    ||||||||||| ||||| ||| ||||| |||||| | |||||  |||||||  ||| |  |||||||||||||||| ||||||||  |||||||||||||    
3601195 ctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcgtgtgtataggcatgcgcactggccaagcgttgttccccctgagaatcgaa 3601096  T
470 tctggtattcctcggatacgt 490  Q
     | |||||||| || ||||||    
3601095 accggtattccccgaatacgt 3601075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 490
Target Start/End: Complemental strand, 21898699 - 21898639
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    |||||||||||||||| |||||||| ||||| |||||||| | |||||||| |||||||||    
21898699 catgcgcactggccaagcgttgttcctcctgggaatcgaacccggtattccccggatacgt 21898639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 494
Target Start/End: Original strand, 10311521 - 10311592
Alignment:
423 gtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttctt 494  Q
    ||||| ||||||||||||||||| ||||||||  | |||| |||||| | |||||||| |||||||||||||    
10311521 gtagagacatgcgcactggccaagcgttgttccccttgaggatcgaacccggtattccccggatacgttctt 10311592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 430 - 483
Target Start/End: Original strand, 13584509 - 13584562
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcg 483  Q
    ||||||||||||||||||||||||| || |  |||||||| |||||||||||||    
13584509 catgcgcactggccaaacgttgttcatcttaggaatcgaacctggtattcctcg 13584562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 435 - 480
Target Start/End: Original strand, 34954683 - 34954728
Alignment:
435 gcactggccaaacgttgttcgtcctgagaatcgaatctggtattcc 480  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||||    
34954683 gcactggccaaacgttgttccccctgagaatcgaacctggtattcc 34954728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 490
Target Start/End: Complemental strand, 19089609 - 19089489
Alignment:
371 ctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaa 469  Q
    ||||||||||| ||||| ||| ||||| ||| || | |||||  |||||||  |||||  ||||| ||||||||||  |||||||  |||| ||||| ||    
19089609 ctttcgcaccggtttccgacccaccaaaggtagacgactaatccggctcgtgcgtagaggcatgctcactggccaagtgttgttccccctgggaatcaaa 19089510  T
470 tctggtattcctcggatacgt 490  Q
     ||||||||||||||||||||    
19089509 cctggtattcctcggatacgt 19089489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 483
Target Start/End: Complemental strand, 32048502 - 32048449
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcg 483  Q
    ||||| ||||| |||||||||||||  ||||| ||||||||||| |||||||||    
32048502 catgcacactgaccaaacgttgttctccctgaaaatcgaatctgatattcctcg 32048449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 490
Target Start/End: Original strand, 6606096 - 6606216
Alignment:
371 ctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaa 469  Q
    ||||||||||| ||||| ||| ||||| |||||| | |||||  ||||| |  |||||  ||||  ||||||||||  |||||||  |||||||||||||    
6606096 ctttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgtacactggccaagtgttgttccccctgagaatcgaa 6606195  T
470 tctggtattcctcggatacgt 490  Q
     | |||||||| |||||||||    
6606196 cccggtattccccggatacgt 6606216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 430 - 498
Target Start/End: Complemental strand, 23823999 - 23823931
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttcttagaa 498  Q
    ||||||||||||||||||||||||   | |||||||| |||||| |||||||||||||||| |||||||    
23823999 catgcgcactggccaaacgttgtttcccttgagaatcaaatctgatattcctcggatacgtccttagaa 23823931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 490
Target Start/End: Original strand, 42210272 - 42210381
Alignment:
381 gtttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcc 480  Q
    |||||| ||| ||||||||||| ||  ||||  |||||||  |||||  ||||||||||||||||||||||||    ||| |||||||| | ||||||||    
42210272 gtttccgacccaccaacggtgggtgattaatccggctcgtgcgtagaggcatgcgcactggccaaacgttgttttcactgggaatcgaagccggtattcc 42210371  T
481 tcggatacgt 490  Q
    ||||||||||    
42210372 tcggatacgt 42210381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 490
Target Start/End: Complemental strand, 1797526 - 1797450
Alignment:
414 ggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    |||||||  ||||| ||||||||||||||||| |||||||   |||| |||||||| | ||||||||||||||||||    
1797526 ggctcgtgcgtagagacatgcgcactggccaagcgttgtttcccctgggaatcgaacccggtattcctcggatacgt 1797450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 490
Target Start/End: Original strand, 17748392 - 17748501
Alignment:
381 gtttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcc 480  Q
    |||||| ||| | ||| |||||| | |||||  |||||||| |||||  |||||||||||||||| ||||||||  |||| |||||||| | ||||||||    
17748392 gtttccgacccaacaaaggtggacgactaatccggctcgtacgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaacccggtattcc 17748491  T
481 tcggatacgt 490  Q
     || ||||||    
17748492 ccgaatacgt 17748501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 490
Target Start/End: Complemental strand, 16802169 - 16802113
Alignment:
434 cgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    |||||||||||| |||||||| |||| ||||||||||| |||||||| ||| |||||    
16802169 cgcactggccaatcgttgttcctcctaagaatcgaatccggtattccccgggtacgt 16802113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 482
Target Start/End: Complemental strand, 29151990 - 29151938
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctc 482  Q
    |||||||||||| |||||||||||| ||||| |||||||| | ||||||||||    
29151990 catgcgcactggtcaaacgttgttcttcctgggaatcgaacccggtattcctc 29151938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 490
Target Start/End: Original strand, 43862031 - 43862091
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    |||||||||||||||||||||||||  |||| |||||||| | |||||||| | |||||||    
43862031 catgcgcactggccaaacgttgttccccctgggaatcgaacccggtattccccagatacgt 43862091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 490
Target Start/End: Original strand, 4228813 - 4228870
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    |||| ||||||||||||||||||||   |||  ||||||| ||||||||||||||||||||    
4228813 catgtgcactggccaaacgttgttc---ctggaaatcgaacctggtattcctcggatacgt 4228870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 491
Target Start/End: Complemental strand, 365190 - 365129
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgtt 491  Q
    |||||||||||   || |||||||| ||||| |||||||| | |||||||||||||||||||    
365190 catgcgcactgattaagcgttgttcctcctgtgaatcgaacccggtattcctcggatacgtt 365129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 495
Target Start/End: Complemental strand, 46414725 - 46414660
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttctta 495  Q
    |||||||| ||||||| |||| ||| ||||||||||||||  ||||||||| ||| ||||| ||||    
46414725 catgcgcattggccaagcgttattcatcctgagaatcgaacttggtattccacgggtacgtcctta 46414660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 490
Target Start/End: Original strand, 10047875 - 10047995
Alignment:
371 ctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaa 469  Q
    ||||||||||| ||||| ||| ||||| |||||| | ||||||  |||| |  |||||  | ||||||||||||||  |||||||  |||| ||||||||    
10047875 ctttcgcaccggtttccgacccaccaatggtggacgactaattctgctcatgcgtagaggcctgcgcactggccaagtgttgttccccctgggaatcgaa 10047974  T
470 tctggtattcctcggatacgt 490  Q
     | |||||||| |||||||||    
10047975 cccggtattccccggatacgt 10047995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 480
Target Start/End: Complemental strand, 22974055 - 22973967
Alignment:
392 accaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcc 480  Q
    ||||| |||||| | ||||| |||||| |  |||||  ||||| |||||||||| ||||||||  ||||||||||||| | ||||||||    
22974055 accaaaggtggacgactaatctggctcatgcgtagacgcatgcacactggccaagcgttgttccccctgagaatcgaacccggtattcc 22973967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 490
Target Start/End: Complemental strand, 48804793 - 48804673
Alignment:
371 ctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaa 469  Q
    ||||||||||| ||||| ||| ||||| |||||| | |||||  ||||| |  |||||  ||||||||||||||||  |||||||  | || ||||||||    
48804793 ctttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccttgggaatcgaa 48804694  T
470 tctggtattcctcggatacgt 490  Q
     | |||||||| |||||||||    
48804693 cccggtattccccggatacgt 48804673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 381 - 499
Target Start/End: Complemental strand, 11069974 - 11069856
Alignment:
381 gtttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcc 480  Q
    |||||| ||| |||||||||||| | ||||||  ||||||  |||||   ||||||||||||||||||||||||  |||  |||||||| ||||||||||    
11069974 gtttccgacccaccaacggtggacgactaattcagctcgtgcgtagaggtatgcgcactggccaaacgttgttccccctcggaatcgaacctggtattcc 11069875  T
481 tcggatacgttcttagaat 499  Q
     ||| ||||| ||| ||||    
11069874 ccgggtacgtccttggaat 11069856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 490
Target Start/End: Complemental strand, 37560220 - 37560160
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    ||||||||||| |||||||||||||  | ||||||||||| |||||||||||||| |||||    
37560220 catgcgcactgaccaaacgttgttccccttgagaatcgaacctggtattcctcgggtacgt 37560160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 490
Target Start/End: Complemental strand, 38962810 - 38962750
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    |||||||||||||||| |||||||| |||||| ||||||| | |||||||| |||||||||    
38962810 catgcgcactggccaagcgttgttcctcctgaaaatcgaacccggtattccccggatacgt 38962750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 488
Target Start/End: Original strand, 14853430 - 14853484
Alignment:
434 cgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatac 488  Q
    ||||||||||||| |||||||  ||||| |||||||||||||||||| |||||||    
14853430 cgcactggccaaaagttgttccccctgaaaatcgaatctggtattccccggatac 14853484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 430 - 499
Target Start/End: Original strand, 6358210 - 6358279
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttcttagaat 499  Q
    ||||||||||||||||  |||||||  ||||  |||||||||||||||||| ||||||||| ||| ||||    
6358210 catgcgcactggccaagtgttgttccccctggaaatcgaatctggtattccccggatacgtcctttgaat 6358279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 490
Target Start/End: Complemental strand, 7747321 - 7747261
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    ||||| ||||||||||||||||||| ||||  |||||||| | |||||||| |||||||||    
7747321 catgcacactggccaaacgttgttcctcctaggaatcgaacccggtattccccggatacgt 7747261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 478
Target Start/End: Original strand, 10026675 - 10026723
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtatt 478  Q
    |||||||||||||||||||||||||  ||||||||||||| | ||||||    
10026675 catgcgcactggccaaacgttgttccccctgagaatcgaacccggtatt 10026723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 490
Target Start/End: Complemental strand, 41220682 - 41220622
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    |||||||||||||||| |||||||| ||||| |||||||| | |||||||| ||| |||||    
41220682 catgcgcactggccaagcgttgttcctcctgggaatcgaacccggtattccccgggtacgt 41220622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 490
Target Start/End: Original strand, 42770710 - 42770770
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    |||||||||||||||| ||||||||  ||||||||| ||| | |||||| |||||||||||    
42770710 catgcgcactggccaagcgttgttccccctgagaattgaacccggtatttctcggatacgt 42770770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 490
Target Start/End: Original strand, 19976859 - 19976926
Alignment:
423 gtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    ||||| |||||||||||| ||||||||| |||  ||||| ||||||| | |||||||| |||||||||    
19976859 gtagagacatgcgcactgaccaaacgttattccccctgaaaatcgaacccggtattccccggatacgt 19976926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 480
Target Start/End: Original strand, 18649085 - 18649135
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcc 480  Q
    ||||||||||| |||||  |||||| |||||||||||||||| ||||||||    
18649085 catgcgcactgcccaaatattgttcctcctgagaatcgaatccggtattcc 18649135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 490
Target Start/End: Original strand, 39806906 - 39807004
Alignment:
392 accaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    ||||| |||||||| |||||  | |||||  |||||  ||||||||||||||||||||||||  || || |||||||| | |||||||| ||| |||||    
39806906 accaaaggtggatgactaatccgactcgtgtgtagaggcatgcgcactggccaaacgttgtttctcttgggaatcgaacccggtattccccgggtacgt 39807004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 490
Target Start/End: Complemental strand, 331597 - 331488
Alignment:
381 gtttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcc 480  Q
    |||||||||| ||||| |||||  | |||||  ||||| |  |||||| ||||||||||||||||  |||||||  |||| |||||||| | ||||||||    
331597 gtttccaacccaccaaaggtgggcgactaatccggctcatgcgtagaagcatgcgcactggccaagtgttgttccccctgggaatcgaacccggtattcc 331498  T
481 tcggatacgt 490  Q
     ||| |||||    
331497 ccgggtacgt 331488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 499
Target Start/End: Original strand, 25540403 - 25540532
Alignment:
371 ctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaa 469  Q
    ||||||||||| ||||| ||| ||||| |||||| | |||||  |||||||  |||||  |||||||||||||||| ||||||||  |||  ||||||||    
25540403 ctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctaggaatcgaa 25540502  T
470 tctggtattcctcggatacgttcttagaat 499  Q
     |  ||||||| | ||||||| ||| ||||    
25540503 cccagtattccccagatacgtccttggaat 25540532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 483
Target Start/End: Original strand, 39201567 - 39201620
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcg 483  Q
    ||||| |||||||||||| ||||||  ||||||||||||||  |||||||||||    
39201567 catgcacactggccaaacattgttccccctgagaatcgaattcggtattcctcg 39201620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 490
Target Start/End: Complemental strand, 10823107 - 10823047
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    |||||||||||||||| |||||||| ||||| ||||| || | |||||||| ||| |||||    
10823107 catgcgcactggccaagcgttgttcctcctgggaatcaaacccggtattccccgggtacgt 10823047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 490
Target Start/End: Complemental strand, 16034984 - 16034924
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    ||||| |||||| ||| ||||||||  ||||| ||||||| | ||||||||||||||||||    
16034984 catgcacactggtcaagcgttgttccgcctgaaaatcgaacccggtattcctcggatacgt 16034924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 490
Target Start/End: Complemental strand, 41187896 - 41187836
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    |||||||||||| ||| |||||||  |||| ||||| ||||  ||||||||||||||||||    
41187896 catgcgcactggtcaagcgttgtttttcctaagaattgaattcggtattcctcggatacgt 41187836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 490
Target Start/End: Complemental strand, 29136009 - 29135900
Alignment:
381 gtttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcc 480  Q
    |||||||||| ||||| |||||| | |||||  ||||| |  |||||  ||||||||||||||||  |||||||  |||| |||||||||| ||||||||    
29136009 gtttccaacccaccaatggtggaagactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaatccggtattcc 29135910  T
481 tcggatacgt 490  Q
     |||||||||    
29135909 ccggatacgt 29135900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 498
Target Start/End: Complemental strand, 41219635 - 41219572
Alignment:
434 cgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttcttagaa 498  Q
    ||||||||||||||||||||| ||||||||||||||  ||||||||| || |||||| |||||||    
41219635 cgcactggccaaacgttgttcctcctgagaatcgaacttggtattcc-cgtatacgtccttagaa 41219572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 490
Target Start/End: Complemental strand, 3755624 - 3755557
Alignment:
423 gtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    ||||| ||||||||||||| |||||||||||| ||||| ||||||||   |||||||| |||||||||    
3755624 gtagagacatgcgcactggtcaaacgttgttcctcctgggaatcgaagtcggtattccccggatacgt 3755557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 480
Target Start/End: Complemental strand, 928685 - 928597
Alignment:
392 accaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcc 480  Q
    ||||| |||||||| |||||  |||||||  ||||   |||||||||||| |||  |||||||  ||||||||||||||||||||||||    
928685 accaaaggtggatgactaatccggctcgtgcgtagcggcatgcgcactggtcaagtgttgttccccctgagaatcgaatctggtattcc 928597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 490
Target Start/End: Original strand, 51683014 - 51683074
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    |||||||||||| ||| ||||||||  |||| |||||||| |||||||||| |||||||||    
51683014 catgcgcactggtcaagcgttgttccccctgggaatcgaacctggtattccccggatacgt 51683074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 498
Target Start/End: Complemental strand, 10040652 - 10040536
Alignment:
381 gtttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcc 480  Q
    |||||||||| ||||| |||||| | | | |  |||||||  |||||  |||||||||||||||| ||||||||  ||||||||||||| | | ||||||    
10040652 gtttccaacccaccaaaggtggacgaccattccggctcgtgcgtagaggcatgcgcactggccaagcgttgttc-ccctgagaatcgaacccgatattcc 10040554  T
481 tcggatacgttcttagaa 498  Q
     ||| ||||| |||||||    
10040553 ccgggtacgtccttagaa 10040536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 479
Target Start/End: Original strand, 35923683 - 35923732
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattc 479  Q
    |||||||||||||||||||||||||  |||  |||||||| |||||||||    
35923683 catgcgcactggccaaacgttgttccccctatgaatcgaacctggtattc 35923732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 490
Target Start/End: Complemental strand, 6462459 - 6462399
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    |||||||||||||||| ||||||||  |||| |||||||| | |||||||| | |||||||    
6462459 catgcgcactggccaagcgttgttctccctgtgaatcgaacccggtattccccagatacgt 6462399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 498
Target Start/End: Complemental strand, 49082871 - 49082803
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttcttagaa 498  Q
    ||||||||||||| || ||||||||  |||| ||||||||   |||||||| ||||||||| |||||||    
49082871 catgcgcactggctaagcgttgttctccctgggaatcgaactcggtattccccggatacgtccttagaa 49082803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 490
Target Start/End: Complemental strand, 6100523 - 6100463
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    |||||||||||||||| |||||||| ||||| |||||||| | |||||||| |||||||||    
6100523 catgcgcactggccaagcgttgttcctcctgggaatcgaacccggtattccccggatacgt 6100463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 487
Target Start/End: Complemental strand, 18374061 - 18374004
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggata 487  Q
    |||||||||||| ||| ||||||||  ||||||||||||| |||||||| | ||||||    
18374061 catgcgcactggtcaagcgttgttctccctgagaatcgaacctggtatttcccggata 18374004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 469
Target Start/End: Original strand, 68164 - 68196
Alignment:
437 actggccaaacgttgttcgtcctgagaatcgaa 469  Q
    |||||||||||||||||| ||||||||||||||    
68164 actggccaaacgttgttcctcctgagaatcgaa 68196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 490
Target Start/End: Complemental strand, 10927657 - 10927597
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    |||||||||||||||| |||||||| ||||  |||||||| | |||||||| ||| |||||    
10927657 catgcgcactggccaagcgttgttcctcctaggaatcgaacccggtattccccgggtacgt 10927597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 490
Target Start/End: Original strand, 45726486 - 45726553
Alignment:
423 gtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    ||||| |||| ||||||||||||| ||| ||| |||||||||||||| | |||||||||||| |||||    
45726486 gtagagacatacgcactggccaaatgttattcctcctgagaatcgaaccaggtattcctcgggtacgt 45726553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 492
Target Start/End: Complemental strand, 44969712 - 44969651
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttc 492  Q
    ||||| |||||||||| |||||||| |||||||||||||| |||||||| ||||| |||||||    
44969712 catgcacactggccaagcgttgttc-tcctgagaatcgaacctggtatttctcgggtacgttc 44969651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 480
Target Start/End: Original strand, 45361942 - 45361992
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcc 480  Q
    |||||||||||||||| |||||||| |||||||||||||| | ||||||||    
45361942 catgcgcactggccaagcgttgttcctcctgagaatcgaacccggtattcc 45361992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 490
Target Start/End: Complemental strand, 5855570 - 5855510
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    |||||||||||||||| |||||||| ||||| |||||||| | |||||||| || ||||||    
5855570 catgcgcactggccaagcgttgttcctcctgggaatcgaacccggtattccccgaatacgt 5855510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 490
Target Start/End: Complemental strand, 16263593 - 16263533
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    |||||||||||||||| |||||||| |||||  ||||||| |||||||||| | |||||||    
16263593 catgcgcactggccaagcgttgttcctcctggaaatcgaacctggtattccccagatacgt 16263533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 484
Target Start/End: Complemental strand, 31734358 - 31734283
Alignment:
408 taatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcgg 484  Q
    |||||||||||||| |||||  |||||||||||||||| |||||||   ||| |||||||||||  |||||||||||    
31734358 taatttggctcgtacgtagaggcatgcgcactggccaatcgttgtttcccct-agaatcgaatccagtattcctcgg 31734283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 490
Target Start/End: Original strand, 12744576 - 12744643
Alignment:
423 gtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    ||||| ||||||||||| | ||| ||||||||  ||||| ||||||||||| |||||||| |||||||    
12744576 gtagagacatgcgcactagtcaagcgttgttccccctgaaaatcgaatctgatattcctcagatacgt 12744643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 490
Target Start/End: Original strand, 12755566 - 12755633
Alignment:
423 gtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    ||||| ||||||||||| | ||| ||||||||  ||||| ||||||||||| |||||||| |||||||    
12755566 gtagagacatgcgcactagtcaagcgttgttccccctgaaaatcgaatctgatattcctcagatacgt 12755633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 499
Target Start/End: Complemental strand, 13265986 - 13265917
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttcttagaat 499  Q
    ||||||||||||| | ||||||||   |||  |||||||| | |||||||||||||||||| ||||||||    
13265986 catgcgcactggctagacgttgttttccctaggaatcgaaccaggtattcctcggatacgtccttagaat 13265917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 499
Target Start/End: Original strand, 34334355 - 34334424
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttcttagaat 499  Q
    ||||||||||||||||  |||||||  |||| |||||||| | |||||||| ||||||||| ||| ||||    
34334355 catgcgcactggccaagtgttgttccccctgggaatcgaacccggtattccccggatacgtccttggaat 34334424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 453
Target Start/End: Complemental strand, 2567373 - 2567301
Alignment:
381 gtttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgtt 453  Q
    |||||| ||| ||||| | |||| ||||||| || ||||| ||||||  |||||||||||||||| |||||||    
2567373 gtttccgacccaccaaagatggacggctaatctgactcgtgagtagaggcatgcgcactggccaagcgttgtt 2567301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 454
Target Start/End: Complemental strand, 8764099 - 8764015
Alignment:
371 ctttcgcaccg-tttccaaccaaccaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttc 454  Q
    ||||||||||| ||||| ||| |||||||||||| | |||||  |||||||  |||||  ||||||||||||||||  |||||||    
8764099 ctttcgcaccggtttccgacccaccaacggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgttc 8764015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 478
Target Start/End: Original strand, 33498899 - 33498947
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtatt 478  Q
    |||||||||||||||| ||||| || |||||||||||||| | ||||||    
33498899 catgcgcactggccaagcgttgctcctcctgagaatcgaacccggtatt 33498947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 498
Target Start/End: Original strand, 41663916 - 41663984
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttcttagaa 498  Q
    ||||||||||| ||||  |||||||  |||| |||||||| | |||||||| ||||||||| |||||||    
41663916 catgcgcactgaccaagtgttgttccccctgggaatcgaacccggtattccccggatacgtccttagaa 41663984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 498
Target Start/End: Complemental strand, 49078162 - 49078094
Alignment:
430 catgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgttcttagaa 498  Q
    ||||||||||||||||  ||||||   |||| |||||||| | |||||||| ||||||||| |||||||    
49078162 catgcgcactggccaagtgttgtttcccctgggaatcgaacccggtattccccggatacgtccttagaa 49078094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 488
Target Start/End: Complemental strand, 9933 - 9837
Alignment:
392 accaacggtggatggctaatttggctcgtaagtagaaacatgcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatac 488  Q
    ||||| |||||| | |||||  |||||||  |||||  |||||||||||||||| ||||||||  ||||  ||||||||| |||||||||| |||||    
9933 accaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctggaaatcgaatccggtattcctcagatac 9837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 490
Target Start/End: Original strand, 8763 - 8820
Alignment:
433 gcgcactggccaaacgttgttcgtcctgagaatcgaatctggtattcctcggatacgt 490  Q
    ||||||||||||| ||||||||  |||| |||||||| | |||||||||| |||||||    
8763 gcgcactggccaagcgttgttccccctgggaatcgaacccggtattcctctgatacgt 8820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University