View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1255_low_22 (Length: 295)
Name: NF1255_low_22
Description: NF1255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1255_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 52 - 293
Target Start/End: Complemental strand, 32422076 - 32421847
Alignment:
| Q |
52 |
ttcatgtagttgtgtcatctaatctttaatagatatggttcagattcaatcttagtattctaaattataaaatgaaaaattaaatatacatt-ttttcta |
150 |
Q |
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| T |
32422076 |
ttcatgtagttgggtaatctaatctttaatagatatggttcagattcaatcttagtattctaaattataaaatgaaaaactaaatatacatttttttcta |
32421977 |
T |
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| Q |
151 |
aactgttcaatcaagattgaatgtcctaagttaacatgattatgtgaatgcgagttcctattaacggtagggaattccattccattaacaccatatagtt |
250 |
Q |
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| T |
32421976 |
aattgttcaatcaagattgaatgttccaagttaacatgatta-------------tcctattaacggtagggaattccattccattaacaccatatagtt |
32421890 |
T |
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| Q |
251 |
agaattccaaaaagttaatcataacataaactttaaaataata |
293 |
Q |
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| T |
32421889 |
agaattccaaaaagttaatcataacataaactttaaaataata |
32421847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 29777057 - 29776981
Alignment:
| Q |
92 |
cagattcaatcttagtattctaaattataaaatgaaaaattaaatatacattttttctaaactgttcaatcaagattg |
169 |
Q |
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| T |
29777057 |
cagattcaaccttagtattttaaattataaaat-aaaaatctaatatgtatattttctaaattgtttgatcaagattg |
29776981 |
T |
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