View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1255_low_29 (Length: 251)
Name: NF1255_low_29
Description: NF1255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1255_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 45173640 - 45173861
Alignment:
| Q |
1 |
ttgagggaagtgtcaaaagcttgctagtcacagaaattatctcaaatgctatgattctagcagaagatccatatgggtttaattctacactcttgaactg |
100 |
Q |
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| T |
45173640 |
ttgagggaagtgtcaaaagcttgctagtcacagaaattatctcaaatgctatgattctagcagaagatccatatgggtttaattctacactcttgaactg |
45173739 |
T |
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| Q |
101 |
atagttacannnnnnnnnnnnnnnnngcattccacatttgaaagtgtattgatatgatatctcacatacttttacacttgcttaaacagttaaacttact |
200 |
Q |
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| T |
45173740 |
atagttacattttattttttatttttgcattccacatttgaaagtgtattgatatgatatctcacatac-tttacacttgcttaaacagttaaacttact |
45173838 |
T |
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| Q |
201 |
agtagttatttatgttacaaatt |
223 |
Q |
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|||| |||||||||||||||||| |
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| T |
45173839 |
agtaattatttatgttacaaatt |
45173861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 48417101 - 48417038
Alignment:
| Q |
34 |
aaattatctcaaatgctatgattctagcagaagatccatatgggtttaattctacactcttgaa |
97 |
Q |
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|||| ||||| ||||||||||| ||||||||||||| |||||||||| |||||||||| ||||| |
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| T |
48417101 |
aaatcatctcgaatgctatgatcctagcagaagatcaatatgggtttgattctacacttttgaa |
48417038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 731394 - 731457
Alignment:
| Q |
34 |
aaattatctcaaatgctatgattctagcagaagatccatatgggtttaattctacactcttgaa |
97 |
Q |
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|||| ||||||||||||||||| ||| |||| |||||||| |||||| ||| |||||||||||| |
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| T |
731394 |
aaatcatctcaaatgctatgatcctatcagaggatccatacgggtttgattttacactcttgaa |
731457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 737947 - 738012
Alignment:
| Q |
34 |
aaattatctcaaatgctatgattctagcagaagatccatatgggtttaattctacactcttgaact |
99 |
Q |
| |
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|||| ||||||||||||||| | |||||||||||||||| || ||| |||| |||||||| |||| |
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| T |
737947 |
aaatcatctcaaatgctatggtcctagcagaagatccattcggatttgattccacactcttcaact |
738012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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