View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1255_low_30 (Length: 251)
Name: NF1255_low_30
Description: NF1255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1255_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 45173590 - 45173355
Alignment:
| Q |
4 |
aatatctacacaatttcttgctacttgatccaaaataacctgaaagatagttcttcgattaattgaatgaaaaaattatttattttttaaccccggacct |
103 |
Q |
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| T |
45173590 |
aatatctacacaatttcttgctacttgatccaaaataacctgaaagatagttcttcgattaattgaatgaaaaaattatttattttttaaccccggacct |
45173491 |
T |
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| Q |
104 |
tgcttatgtattgttcccataaactgaactaagcttacaagaactatataatcgaaaggaaaacaaaacaagtttgagaagtagcattaattactctttt |
203 |
Q |
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| T |
45173490 |
tgcttatgtattgttcccacgaactgagctaagcttacaagaactatataattgaaaggaaaacaaaacaagtttgagacgtagcattaattactctttt |
45173391 |
T |
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| Q |
204 |
gtgttcggactgaaaaaacttcaggcactgcagaat |
239 |
Q |
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| T |
45173390 |
gtgttcggactgaaaaaacttcaggcactgcagaat |
45173355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 48417184 - 48417237
Alignment:
| Q |
4 |
aatatctacacaatttcttgctacttgatccaaaataacctgaaagatagttct |
57 |
Q |
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|||||| ||||||||||||||||||| |||||| |||| |||||| | |||||| |
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| T |
48417184 |
aatatcaacacaatttcttgctacttcatccaagataatctgaaacaaagttct |
48417237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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