View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1255_low_43 (Length: 214)
Name: NF1255_low_43
Description: NF1255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1255_low_43 |
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Alignment Details
Target: chr6 (Bit Score: 116; Significance: 3e-59; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 6409320 - 6409439
Alignment:
| Q |
1 |
caaaaaacagaacactagaacccaaaactgatagaaactcacttcaatcaaatgaacataaatgaccaaaagaaacacatgaataactgctgcagccaac |
100 |
Q |
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| T |
6409320 |
caaaaaacagaacactagaacccaaaactgatagaaactcacttcaatcaaatgaacataaatgaccaaaagaaacacatgaataactgctgcagccaac |
6409419 |
T |
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| Q |
101 |
agaaccaaaacatgaaaccc |
120 |
Q |
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| T |
6409420 |
ataaccaaaacatgaaaccc |
6409439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 6435964 - 6436003
Alignment:
| Q |
3 |
aaaaacagaacactagaacccaaaactgatagaaactcac |
42 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |
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| T |
6435964 |
aaaaacagaacactagaccccaaaactgatagaaactcac |
6436003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 6431469 - 6431516
Alignment:
| Q |
3 |
aaaaacagaacactagaacccaaaactgatagaaactcacttcaatca |
50 |
Q |
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|||||| |||||||||| ||||||||| ||||||||||||| |||||| |
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| T |
6431469 |
aaaaacggaacactagaccccaaaactcatagaaactcactgcaatca |
6431516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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