View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1255_low_44 (Length: 208)
Name: NF1255_low_44
Description: NF1255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1255_low_44 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 1e-67; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 52 - 205
Target Start/End: Original strand, 11797130 - 11797283
Alignment:
| Q |
52 |
agaagaaaatttggttcaatggaggaatacaatgaagttttggtagaagctcaattaactgatcttgtagatggtgctgttgattatacaggacaacctg |
151 |
Q |
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| T |
11797130 |
agaagaaaatttggttcaatggaggaatacaatgacgttttgttagaagctcaattaactgatcttgtagatggtgctgttgattatagagggcaacctg |
11797229 |
T |
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| Q |
152 |
cgattagatccaaatctggttattggcgatccgcttggtttatcataggtacta |
205 |
Q |
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| T |
11797230 |
caatcagatccaaatctggttattggcgatccgcttggtttatcataggtacta |
11797283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 52 - 203
Target Start/End: Original strand, 11778559 - 11778710
Alignment:
| Q |
52 |
agaagaaaatttggttcaatggaggaatacaatgaagttttggtagaagctcaattaactgatcttgtagatggtgctgttgattatacaggacaacctg |
151 |
Q |
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| T |
11778559 |
agaagaaaatttggttcgatggaagaatacaatgatgttttgttagatgctaaattagctgatcttgtagatggtgctgttgattatagaggacaacctg |
11778658 |
T |
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| Q |
152 |
cgattagatccaaatctggttattggcgatccgcttggtttatcataggtac |
203 |
Q |
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| T |
11778659 |
ccatcagatccaaatctggttattggctatccgcttggtttatcataggtac |
11778710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 70 - 202
Target Start/End: Original strand, 11701497 - 11701626
Alignment:
| Q |
70 |
atggaggaatacaatgaagttttggtagaagctcaattaactgatcttgtagatggtgctgttgattatacaggacaacctgcgattagatccaaatctg |
169 |
Q |
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| T |
11701497 |
atggaagaatccaatgaagtgttgttagaagctcaattatct---cttgttgatggcgctgttgactacaatggacagcctgcagttaggtttaaatctg |
11701593 |
T |
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| Q |
170 |
gttattggcgatccgcttggtttatcataggta |
202 |
Q |
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| T |
11701594 |
gttattggagatccgcttggtttatcataggta |
11701626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 11695776 - 11695839
Alignment:
| Q |
141 |
aggacaacctgcgattagatccaaatctggttattggcgatccgcttggtttatcataggtact |
204 |
Q |
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| T |
11695776 |
aggacaacctgccgttagatccaaaactggctattggagatccgcttggtttatcataggtact |
11695839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 11675245 - 11675293
Alignment:
| Q |
155 |
ttagatccaaatctggttattggcgatccgcttggtttatcataggtac |
203 |
Q |
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| T |
11675245 |
ttaggtccaaaactggttattggagatccgcttggtttatcattggtac |
11675293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 11683524 - 11683572
Alignment:
| Q |
155 |
ttagatccaaatctggttattggcgatccgcttggtttatcataggtac |
203 |
Q |
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| T |
11683524 |
ttaggtccaaaactggttattggagatccgcttggtttatcattggtac |
11683572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 15852 - 15914
Alignment:
| Q |
141 |
aggacaacctgcgattagatccaaatctggttattggcgatccgcttggtttatcataggtac |
203 |
Q |
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| T |
15852 |
aggacaacctgccgttaggtccaaatctggttactggagatccgcttggtttatcataggtac |
15914 |
T |
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