View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1256-Insertion-1 (Length: 910)

Name: NF1256-Insertion-1
Description: NF1256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1256-Insertion-1
NF1256-Insertion-1
[»] chr2 (2 HSPs)
chr2 (7-817)||(6522283-6523095)
chr2 (842-910)||(6523091-6523160)
[»] chr7 (4 HSPs)
chr7 (120-241)||(10569840-10569961)
chr7 (120-241)||(10565986-10566108)
chr7 (818-870)||(29117894-29117946)
chr7 (658-697)||(8842158-8842197)
[»] chr3 (6 HSPs)
chr3 (668-869)||(21088886-21089102)
chr3 (310-436)||(32985141-32985262)
chr3 (663-747)||(32985554-32985637)
chr3 (558-604)||(32985385-32985431)
chr3 (643-672)||(21088713-21088742)
chr3 (196-240)||(32985041-32985086)
[»] chr4 (2 HSPs)
chr4 (306-427)||(6947415-6947537)
chr4 (818-869)||(6453697-6453748)
[»] chr5 (1 HSPs)
chr5 (188-234)||(25191764-25191810)
[»] chr8 (1 HSPs)
chr8 (813-869)||(40196576-40196632)
[»] chr1 (3 HSPs)
chr1 (34-129)||(28819446-28819541)
chr1 (465-508)||(35019344-35019388)
chr1 (359-436)||(28819127-28819204)


Alignment Details
Target: chr2 (Bit Score: 691; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 7 - 817
Target Start/End: Original strand, 6522283 - 6523095
Alignment:
Q  7 aaatagcattcttattttgattaaggcagaagtcttgaaacacaataatttccaaggaaagnnnnnnncctatggtaacatttttgaatgattgagtctg 106  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  6522283 aaatagcatacttattttgattaaggcagaagtcttaaaacacaataatttccaaggaaagaagaaaacctatggtaacatttttgaatgattgagtctg 6522382  T
Q  107 tcaaaacaagatttgatattaagaacaaaaagacattatgatatcaaaatgaacataacaaaataaaaatcaactaaaaccatttataatgtcatgtttt 206  Q
    || ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6522383 tcgaaacaagatttgatattaagaacaaaaggacattatgatatcaaaatggacataacaaaataaaaatcaactaaaaccatttctaatgtcatgtttt 6522482  T
Q  207 ttctgcctgctaattcgagttagattcagattgaaaaccatttgctgaagaaatctgcagtcctgaatgctccttaagtgttactggcttgaaattgaat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6522483 ttctgcctgctaattcgagttagattcagattgaaaaccatttgctgaagaaatctgcagtcctgaatgctccttaagtgttactggcttgaaattgaat 6522582  T
Q  307 tatatggttgaatggctgattgttccattccttgtagcttaagaaagtttgtctcaataaggatttgaatatggttatttaataccagtgtgttgaagca 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6522583 tatatggttgaatggctgattgttccattccttgtagcttaagaaagtttgtctcaataaggatctgaatatggttatttaataccagtgtgttgaagca 6522682  T
Q  407 agataagatgagatcacataagctaatcaagggaaaaacctgtcaaatttattgcactagaccttgcgtatgcgagagctttgtgcaccgggctgccatt 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6522683 agataagatgagatcacataagctaatcaagggaaaaacctgtcaaatttattgcactagaccttgcgtatgcgggagctttgtgcaccgggctgccatt 6522782  T
Q  507 ttcaaagttttttgtaaaatttatcaaagctattaggccaaactgactcttaatgagattttgaatatcattgccaacacaatgattttcagtctatagc 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6522783 ttcaaagttttttgtaaaatttatcaaagctattaggccaaactgactcttaatgagattttgaatatcattgccaacacaatgattttcagtctatagc 6522882  T
Q  607 aatcactcttgtcatgtaagaaaaaggccaacactgaatatcattgactctcaaaacaacataccatttcccaaactgtcttcacaaagggcaacattgt 706  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6522883 aaccactcttgtcatgtaagaaaaaggccaacactgaatatcattgactctcaaaacaacataccatttcccaaactgtcttcacaaagggcaacattgc 6522982  T
Q  707 tttctcatgtaagaaaatatcagtttcttacattgagaacac-----------agttcccaaaacaacgttgatttgtgatagattaatgtctgaatatt 795  Q
    ||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||         ||||||||    
T  6522983 tttctcatgtaagaaaatatcagtttcttacattgagaacacatcactatctgagttcccaaaacaacgttgatttgtgatag---------tgaatatt 6523073  T
Q  796 tgttaatatagtttgacttaca 817  Q
    ||||||||||||||||||||||    
T  6523074 tgttaatatagtttgacttaca 6523095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 842 - 910
Target Start/End: Original strand, 6523091 - 6523160
Alignment:
Q  842 ttacattgagagtttatatgaaataaattccaataa-ttatacttgtgatttgcgagcatgtcagtaata 910  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  6523091 ttacattgagagtttatatgaattaaattccaataatttatacttgtgatttgcgagcatgtcagtaata 6523160  T

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Target: chr7 (Bit Score: 114; Significance: 2e-57; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 120 - 241
Target Start/End: Complemental strand, 10569961 - 10569840
Alignment:
Q  120 tgatattaagaacaaaaagacattatgatatcaaaatgaacataacaaaataaaaatcaactaaaaccatttataatgtcatgttttttctgcctgctaa 219  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10569961 tgatattatgaacaaaaagacattatgatatcaaaatgaacataacaaaataaaaatcaactaaaaccatttctaatgtcatgttttttctgcctgctaa 10569862  T
Q  220 ttcgagttagattcagattgaa 241  Q
    ||||||||||||||||||||||    
T  10569861 ttcgagttagattcagattgaa 10569840  T

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Target: chr7; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 120 - 241
Target Start/End: Original strand, 10565986 - 10566108
Alignment:
Q  120 tgatattaagaacaaaaagacattatgatatcaaaatgaacataacaaaataaaaatcaactaaaa-ccatttataatgtcatgttttttctgcctgcta 218  Q
    |||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  10565986 tgatattaggaacaaaacgacattatgatatcaaaatgaacattacaaaataaaaatcaactaaaacccatttctaatgtcatgttttttctgcctgcta 10566085  T
Q  219 attcgagttagattcagattgaa 241  Q
    |||||||||||||||||||||||    
T  10566086 attcgagttagattcagattgaa 10566108  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 818 - 870
Target Start/End: Complemental strand, 29117946 - 29117894
Alignment:
Q  818 attgattgacaatataaaaaatatttacattgagagtttatatgaaataaatt 870  Q
    ||||||||||||| ||||||||||||||| ||| ||| |||||||||||||||    
T  29117946 attgattgacaatctaaaaaatatttacactgatagtgtatatgaaataaatt 29117894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 658 - 697
Target Start/End: Complemental strand, 8842197 - 8842158
Alignment:
Q  658 caaaacaacataccatttcccaaactgtcttcacaaaggg 697  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  8842197 caaaacaacatactattttccaaactgtcttcacaaaggg 8842158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 3e-32; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 668 - 869
Target Start/End: Original strand, 21088886 - 21089102
Alignment:
Q  668 taccatttcccaaactgtcttcacaaagggcaacattgttttctcatgtaagaaaata--tcagtttcttacattgagaa-----------cacagttcc 754  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |  |||| || ||||||||||||           |  ||||||    
T  21088886 taccatttcccaaactgtctacacaaagggcaacattgttttctgatgtaagaaaaaaaatcagctt-ttacattgagaatgtgtcattatctgagttcc 21088984  T
Q  755 caaaacaacgttgatttgtgatagattaatgtctgaatatttgt---taatatagtttgacttacaattgattgacaatat-aaaaaatatttacattga 850  Q
    ||||||||| |||||| | ||||||| ||| || ||||||||||   |||||||||||||||||| || |||||||||||| ||||||||||||||||||    
T  21088985 caaaacaacattgatt-gagatagataaatttcagaatatttgtaattaatatagtttgacttacgatagattgacaatattaaaaaatatttacattga 21089083  T
Q  851 gagtttatatgaaataaat 869  Q
    |||| |||||||| |||||    
T  21089084 gagtgtatatgaattaaat 21089102  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 310 - 436
Target Start/End: Original strand, 32985141 - 32985262
Alignment:
Q  310 atggttgaatggctgattgttccattccttgtagcttaagaaagtttgtctcaataaggatttgaatatggttatttaataccagtgtgttgaagcaaga 409  Q
    ||||||||||||||||||||||||||| ||||||||||||| || ||| ||||||||||||||| ||||     ||| |||||  ||  |||||||||||    
T  32985141 atggttgaatggctgattgttccattcattgtagcttaagatagattgcctcaataaggatttggatat-----ttttataccgatgcattgaagcaaga 32985235  T
Q  410 taagatgagatcacataagctaatcaa 436  Q
    |||||||||||| || |||||||||||    
T  32985236 taagatgagatcgcaaaagctaatcaa 32985262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 663 - 747
Target Start/End: Original strand, 32985554 - 32985637
Alignment:
Q  663 caacataccatttcccaaactgtcttcacaaagggcaacattgttttctcatgtaagaaaatatcagtttcttacattgagaaca 747  Q
    ||||||||||||||||||| |||||| | |||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||    
T  32985554 caacataccatttcccaaattgtcttaaaaaagggcaacattg-tttctcatgtaagaaaaaatcagtttctaacattgagaaca 32985637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 558 - 604
Target Start/End: Original strand, 32985385 - 32985431
Alignment:
Q  558 aatgagattttgaatatcattgccaacacaatgattttcagtctata 604  Q
    |||||||||||||| ||| ||||||| |||| |||||||||||||||    
T  32985385 aatgagattttgaacatcgttgccaagacaaagattttcagtctata 32985431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 643 - 672
Target Start/End: Original strand, 21088713 - 21088742
Alignment:
Q  643 aatatcattgactctcaaaacaacatacca 672  Q
    ||||||||||||||||||||||||||||||    
T  21088713 aatatcattgactctcaaaacaacatacca 21088742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 32985041 - 32985086
Alignment:
Q  196 tgtcatgttttttctgcctgctaattcgag-ttagattcagattga 240  Q
    ||||||||||||||||  |||||||||||| |||||||||||||||    
T  32985041 tgtcatgttttttctgtttgctaattcgagtttagattcagattga 32985086  T

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Target: chr4 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 306 - 427
Target Start/End: Complemental strand, 6947537 - 6947415
Alignment:
Q  306 ttatatggttgaatggctgattgttccattccttgtagcttaagaaagtttgtctcaataaggatttgaatatggttat-ttaataccagtgtgttgaag 404  Q
    ||||| || |||||| ||||||||||||||||||||||||||||| |||| |  ||||||||||||||||||||||| | || |||| |  |||||||||    
T  6947537 ttataaggctgaatgactgattgttccattccttgtagcttaagatagttagcttcaataaggatttgaatatggttttatttatactaacgtgttgaag 6947438  T
Q  405 caagataagatgagatcacataa 427  Q
     ||| ||  ||||||||||||||    
T  6947437 aaaggtacaatgagatcacataa 6947415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 818 - 869
Target Start/End: Complemental strand, 6453748 - 6453697
Alignment:
Q  818 attgattgacaatataaaaaatatttacattgagagtttatatgaaataaat 869  Q
    |||||||||||||||||||||| |||| | ||| ||| ||||||||||||||    
T  6453748 attgattgacaatataaaaaatgtttaaaatgatagtgtatatgaaataaat 6453697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 25191764 - 25191810
Alignment:
Q  188 atttataatgtcatgttttttctgcctgctaattcgagttagattca 234  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  25191764 atttgtaatgtcatgttttttctgcctgctaattcgagttagattca 25191810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 813 - 869
Target Start/End: Complemental strand, 40196632 - 40196576
Alignment:
Q  813 ttacaattgattgacaatataaaaaatatttacattgagagtttatatgaaataaat 869  Q
    |||||||||||||||||||||||||||||||||||| | | | |||||||| |||||    
T  40196632 ttacaattgattgacaatataaaaaatatttacattaataatgtatatgaattaaat 40196576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 28819541 - 28819446
Alignment:
Q  34 agaagtcttgaaacacaataatttccaaggaaagnnnnnnncctatggtaacatttttgaatgattgagtctgtcaaaacaagatttgatattaag 129  Q
    ||||||||| ||| |||| | |||||||||||||       | |||| |||| |||||||||||||||||| ||||||||| ||||||| ||||||    
T  28819541 agaagtcttaaaatacaagagtttccaaggaaagaagagaacttatgataacctttttgaatgattgagtcagtcaaaacatgatttgaaattaag 28819446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 465 - 508
Target Start/End: Original strand, 35019344 - 35019388
Alignment:
Q  465 agaccttgcgtatgcgagagcttt-gtgcaccgggctgccatttt 508  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||    
T  35019344 agaccctgcgtatgcgagagctttagtgcaccgggctgccatttt 35019388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 359 - 436
Target Start/End: Complemental strand, 28819204 - 28819127
Alignment:
Q  359 ctcaataaggatttgaatatggttatttaataccagtgtgttgaagcaagataagatgagatcacataagctaatcaa 436  Q
    |||| ||||| |||| ||||| ||| || |||| ||||||||| |||||||||||| ||||||| ||| |||| ||||    
T  28819204 ctcagtaagggtttggatatgattaatttatactagtgtgttggagcaagataagacgagatcatatatgctactcaa 28819127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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