View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12560_high_1 (Length: 517)
Name: NF12560_high_1
Description: NF12560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12560_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 23 - 509
Target Start/End: Complemental strand, 32552148 - 32551655
Alignment:
| Q |
23 |
acacatccgtgttcatggtcatggttttgagcatgtattgtttgaatttgatagccaacttaatcttgtaaatgccattctcaaagcttcaacttttgag |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32552148 |
acacatccgtgttcatggtcatggttttgagcatgtattgtttgaatttgatagccaagttaatcttgtaaatgccattctcaaagcttcaacttttgag |
32552049 |
T |
|
| Q |
123 |
aatggttaacaagtgaatataattgctcactatataacatgaat-----gtcaatatctgaatctagccccgtgaattattaatctattatcaccttatt |
217 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32552048 |
aatagttaacaagtgaatataattgctcactatataacatgaattgaatgtcaatatctgaatctagccccgttaattattaatctattatcaccttatt |
32551949 |
T |
|
| Q |
218 |
tgtattttgcttttcatattttgcaatgaaaccaaataaaatcatttggactctacnnnnnnnnn--gggtaaactagtaagaactataactaactgtgt |
315 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32551948 |
tgtattttgtttttcatattttgcgatgaaaccaaataaaatcatttggactctacaaaaaaaaaaagggtaaactagtaagaactataactaactgtgt |
32551849 |
T |
|
| Q |
316 |
caccgcagttaggtgttgctgtagatagcctttcctagtctttcatgtaactaactttctattgataacaaatctcaacaaatttcagagatgaatacac |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32551848 |
caccgcagttaggtgttgctgtagatagcctttcctagtctttcatgtaactaactttctattgataacaaatctcaacaaatttcagagatgaatacac |
32551749 |
T |
|
| Q |
416 |
aatctctcaagtttctatagctttatcgcttttctgttatggtatatagagctttctagttccatttctacggcttccgagtctgattcttctc |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32551748 |
aatctctcaagtttctatagctttatcgcttttctgttatggtatatagagctttctagttccatttctacggcttccgagtctgattcttctc |
32551655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University