View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12560_high_12 (Length: 272)
Name: NF12560_high_12
Description: NF12560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12560_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 45342715 - 45342496
Alignment:
| Q |
30 |
atggagttagaagacattgctgaatttgcagacgatgatgagaaatattattatagtgttgtattcgtatgatgaagtgttattttgaaaattaaaaaga |
129 |
Q |
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| T |
45342715 |
atggagttagaagacattgctgaatttgcagacgatgatgacaaatattat---agtgttgtattcgtatgatgaagtgttattttgaaaattaaaaaga |
45342619 |
T |
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| Q |
130 |
tgctctgttctgttggattcgtgatgtagttcatttatacaatattgagaaataattcatcttgccttcacctaataccttaaaacttttggcatatttg |
229 |
Q |
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| T |
45342618 |
tgctctgtt-----ggattcgtgatgtagttcatttatacaatattgagaaataattcatcttgccttcacctaatacctt-aaacttttgacatatttg |
45342525 |
T |
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| Q |
230 |
ttcacgaaatatggtatcacattcacagg |
258 |
Q |
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| T |
45342524 |
ttcacgaaatatggtatcacattcacagg |
45342496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 45347089 - 45346970
Alignment:
| Q |
138 |
tctgttggattcgtgatgtagttcatttatacaatattgagaaataattcatcttgccttcacctaataccttaaaacttttggcatatttgttcacgaa |
237 |
Q |
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| T |
45347089 |
tctgttggattcgtgatgtagttcatttatacaatattgagaaataattcatcttgccttcacctaatacctt-aaacttttgacatatttgttcacgaa |
45346991 |
T |
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| Q |
238 |
atatggtatcacattcacagg |
258 |
Q |
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| T |
45346990 |
atatggtatcacattcacagg |
45346970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 45370719 - 45370669
Alignment:
| Q |
30 |
atggagttagaagacattgctgaatttgcagacgatgatgagaaatattat |
80 |
Q |
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| T |
45370719 |
atggagttagaagacattgttgaatttgcagatgatgatgagaaatgttat |
45370669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 48855813 - 48855852
Alignment:
| Q |
36 |
ttagaagacattgctgaatttgcagacgatgatgagaaat |
75 |
Q |
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| T |
48855813 |
ttagaagatattgctgaatttgcagatgatgatgagaaat |
48855852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 239
Target Start/End: Original strand, 48865371 - 48865518
Alignment:
| Q |
86 |
tgttgtattcgtatgatgaagtgttattttgaaaattaaaaagatgctctgttctgttggattcgtgatgtagttcatttatacaatattgagaaataat |
185 |
Q |
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| T |
48865371 |
tgttgcattcttatgatgaagtgttatttccaagattaaaaagatgctccattgaattgg---tgtgatagagttcatttatacaatattgaaaaacaat |
48865467 |
T |
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| Q |
186 |
tcatcttgccttcacctaataccttaaaacttttggcat-atttgttcacgaaat |
239 |
Q |
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| T |
48865468 |
tta---tgtcttcacataatagctt-aaacttttggcataatttgttcacaaaat |
48865518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 45349616 - 45349561
Alignment:
| Q |
107 |
tgttattttgaaaattaaaaagatgctctgttctgttggattcgtgatgtagttcatttat |
167 |
Q |
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| T |
45349616 |
tgttattttgaaaattaaaaatatgctctttt-----ggattcgtgatggagttcatttat |
45349561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 45359095 - 45359040
Alignment:
| Q |
107 |
tgttattttgaaaattaaaaagatgctctgttctgttggattcgtgatgtagttcatttat |
167 |
Q |
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| T |
45359095 |
tgttattttgaaaattaaaaatatgctctttt-----ggattcgtgatggagttcatttat |
45359040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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