View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12560_high_16 (Length: 234)
Name: NF12560_high_16
Description: NF12560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12560_high_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 36496602 - 36496376
Alignment:
| Q |
13 |
aaggtgcggatacattccaaaggattaatgaaccactcgtagaataagcacgaatatcctatcttcttgcaggttgatctatctaaaatattcattgtat |
112 |
Q |
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| T |
36496602 |
aaggtgcggatacattccaaaggattaatgaaccactcgtagaataagcacgaatatcctatcttcttgcaggttgatctatctaaaatattcattgtat |
36496503 |
T |
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| Q |
113 |
attaatgtgtttaacctaactttttcattc-----taagataaattattatgtttagaaaaaatattaatgcacctaataatttacatagggagttcaag |
207 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36496502 |
attaatgtgtttaacctaactttttcattctaagctaagataaattattatgtttagaaaaaatattaatgcacctaataatttacatagggagttcaag |
36496403 |
T |
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| Q |
208 |
aggcactgctgggttgtgggttcaagc |
234 |
Q |
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| T |
36496402 |
aggcactgctgggttgtgggttcaagc |
36496376 |
T |
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