View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12560_high_18 (Length: 216)

Name: NF12560_high_18
Description: NF12560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12560_high_18
NF12560_high_18
[»] chr5 (5 HSPs)
chr5 (3-215)||(36203086-36203297)
chr5 (3-93)||(9851321-9851410)
chr5 (10-93)||(15205483-15205566)
chr5 (96-164)||(9080655-9080724)
chr5 (10-67)||(29006661-29006718)
[»] chr3 (5 HSPs)
chr3 (93-215)||(33709824-33709945)
chr3 (86-165)||(52653817-52653896)
chr3 (3-93)||(52653924-52654014)
chr3 (3-93)||(33709981-33710070)
chr3 (96-179)||(40574317-40574401)
[»] chr1 (4 HSPs)
chr1 (97-215)||(49053788-49053905)
chr1 (3-93)||(49053944-49054034)
chr1 (91-215)||(49061368-49061491)
chr1 (3-93)||(49061524-49061614)
[»] chr7 (3 HSPs)
chr7 (3-93)||(12239499-12239590)
chr7 (97-162)||(12239628-12239693)
chr7 (44-93)||(24870567-24870616)
[»] scaffold0007 (1 HSPs)
scaffold0007 (97-179)||(217778-217861)
[»] chr8 (4 HSPs)
chr8 (97-215)||(12729385-12729502)
chr8 (15-93)||(28696007-28696085)
chr8 (13-93)||(12729541-12729621)
chr8 (10-93)||(44729228-44729311)
[»] chr6 (2 HSPs)
chr6 (97-179)||(11931984-11932066)
chr6 (10-93)||(11932104-11932187)
[»] chr4 (1 HSPs)
chr4 (96-179)||(20251439-20251523)
[»] chr2 (1 HSPs)
chr2 (108-184)||(34681118-34681195)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 3e-93; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 36203297 - 36203086
Alignment:
Q  3 atgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaatagaatcct 102  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || |||||||||||| |||||||||||||||||||||    
T  36203297 atgaattgtgcacataaatttcatggcgtgtgtgggccacactaacctttaagttcgattcgtccccaccagttatgccaaccggatgcaatagaatcct 36203198  T
Q  103 tgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaacgaaca 202  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  36203197 tgacgtgacttgcacgttcacatcaagtgtatctgcaatggtagcttacaaaataaagttctgacaaattctctcgtaca-ctaaagaagagaacgaata 36203099  T
Q  203 atttagtataatt 215  Q
    |||||||||||||    
T  36203098 atttagtataatt 36203086  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 9851321 - 9851410
Alignment:
Q  3 atgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 93  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||| |||| |||| |||| |||| |||||||| || ||||| ||||||    
T  9851321 atgaattgtgcacataaattccaaagcgtgtgtgggacacactaacatttaggttcaattctccct-accagttaagccaaccgaatgcaa 9851410  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 15205566 - 15205483
Alignment:
Q  10 gtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 93  Q
    |||| |||||||| ||  ||||||||||| ||||||||| || | |||||||||| || ||||||||||||  || ||||||||    
T  15205566 gtgcccataaatttcaaagcgtgtgtgggacacactaactttgaggttcgattcgtccccaccagttatgccgactggatgcaa 15205483  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 9080655 - 9080724
Alignment:
Q  96 gaatccttgacgtgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttct 164  Q
    |||| |||||||| |||||||| ||||||| ||  |||| || ||||||||| |||||||||||||||||    
T  9080655 gaattcttgacgtaacttgcacattcacattaaacgtatagatcaatggtagtttacaaaataaagttct 9080724  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 29006718 - 29006661
Alignment:
Q  10 gtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccc 67  Q
    ||||||||||||| ||  ||||||||| | ||||||||| |||| |||||||||||||    
T  29006718 gtgcacataaatttcaaagcgtgtgtgagacacactaacttttaggttcgattcgccc 29006661  T

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Target: chr3 (Bit Score: 63; Significance: 1e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 93 - 215
Target Start/End: Complemental strand, 33709945 - 33709824
Alignment:
Q  93 atagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaag 192  Q
    ||||||||||||||||||||||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| |||||||||| || || ||| ||||     
T  33709945 atagaatccttgacgtgacttgcacattcacaccaagcgtatcgacaatggtagtttacagaataaagttctgtcaaattctctggtgca-ctagagaaa 33709847  T
Q  193 agaacgaacaatttagtataatt 215  Q
    |||| |||  |||||||||||||    
T  33709846 agaaagaatgatttagtataatt 33709824  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 86 - 165
Target Start/End: Complemental strand, 52653896 - 52653817
Alignment:
Q  86 ggatgcaatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctg 165  Q
    |||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||    
T  52653896 ggatacaatggaatccttgacgtgacttgcacattcacatcaagtgtatcgacaatggtagtttacagaataaagttctg 52653817  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 52654014 - 52653924
Alignment:
Q  3 atgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 93  Q
    ||||| |||||||||||||||||  ||||||||||| ||||||||| |||| |||| ||||||||||||||||||||| ||||||||||||    
T  52654014 atgaagtgtgcacataaattccaaagcgtgtgtgggacacactaacctttaggttcaattcgccctcaccagttatgccaaccggatgcaa 52653924  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 33710070 - 33709981
Alignment:
Q  3 atgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 93  Q
    ||||| ||||||| |||||||||  ||||||||||| ||||||||| |||| | ||||||| ||  |||||||||||  ||||||||||||    
T  33710070 atgaagtgtgcac-taaattccaaagcgtgtgtgggacacactaacctttaggatcgattcacctccaccagttatgtcaaccggatgcaa 33709981  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 40574317 - 40574401
Alignment:
Q  96 gaatccttgacgtgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttctgacaaattctctcgt 179  Q
    ||||| |||||||||||||||| ||||||  ||| ||||| | ||||| ||| ||||| |||||||||||| ||| |||||||||    
T  40574317 gaatctttgacgtgacttgcacattcacacgaagcgtatcaatcaatgatagtttacagaataaagttctgtcaatttctctcgt 40574401  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 49053905 - 49053788
Alignment:
Q  97 aatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaa 196  Q
    ||||||||||||||||||||| |||||| ||||  ||||||||||||||| |||||||||||||||||| ||| ||| ||||| || ||| |||||||||    
T  49053905 aatccttgacgtgacttgcacattcacaccaagcatatcgacaatggtagtttacaaaataaagttctgccaatttccctcgtgca-ctagagaagagaa 49053807  T
Q  197 cgaacaatttagtataatt 215  Q
     |||  |||||||||||||    
T  49053806 agaatgatttagtataatt 49053788  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 49054034 - 49053944
Alignment:
Q  3 atgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 93  Q
    ||||| ||| |||||||||||||  |||||||||||  |||||||| |||| ||||||||||||| |||||||||| | ||| ||||||||    
T  49054034 atgaagtgtacacataaattccaatgcgtgtgtgggaaacactaacctttaggttcgattcgcccccaccagttataccaactggatgcaa 49053944  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 215
Target Start/End: Complemental strand, 49061491 - 49061368
Alignment:
Q  91 caatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaaga 190  Q
    |||| ||||||||||||||| |||||| |||||| |||   ||||||||||||||| ||||| ||||||||| || ||| ||| ||||| || ||| |||    
T  49061491 caatggaatccttgacgtgatttgcacattcacaccaaacatatcgacaatggtagtttacagaataaagttttgtcaatttccctcgtgca-ctagaga 49061393  T
Q  191 agagaacgaacaatttagtataatt 215  Q
    | |||| |||  |||||||||||||    
T  49061392 aaagaaagaatgatttagtataatt 49061368  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 49061614 - 49061524
Alignment:
Q  3 atgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 93  Q
    ||||| ||||||||||||||| |  |||||||||||  ||||||   |||| ||||||||||||| |||||||||||| |||  |||||||    
T  49061614 atgaagtgtgcacataaattctaaagcgtgtgtgggaaacactagtctttaggttcgattcgcccccaccagttatgccaactagatgcaa 49061524  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 12239499 - 12239590
Alignment:
Q  3 atgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatg-caaaccggatgcaa 93  Q
    ||||| |||||||||||||| ||  ||||||||||| |||| |||| |||| ||||||||||||| ||||||||||| ||||||||||||||    
T  12239499 atgaagtgtgcacataaatttcaaagcgtgtgtgggacacattaacctttaggttcgattcgcccccaccagttatgtcaaaccggatgcaa 12239590  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 12239628 - 12239693
Alignment:
Q  97 aatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagtt 162  Q
    ||||||||||||||||||||| |||||| |||| |||||||||||||||| || || |||||||||    
T  12239628 aatccttgacgtgacttgcacattcacaccaagcgtatcgacaatggtagtttccagaataaagtt 12239693  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 24870616 - 24870567
Alignment:
Q  44 ctaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 93  Q
    ||||| ||||||||||||||||||  ||||||||||| ||||||||||||    
T  24870616 ctaacctttaagttcgattcgcccctaccagttatgccaaccggatgcaa 24870567  T

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Target: scaffold0007 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 217861 - 217778
Alignment:
Q  97 aatccttgacgtgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttctgacaaattctctcgt 179  Q
    ||||||||| | ||||||||| |||||| |||||||||||| ||||||||| ||||||||||| |||||| ||| |||||||||    
T  217861 aatccttgaagagacttgcacattcacaccaagtgtatcgatcaatggtagtttacaaaataatgttctgccaatttctctcgt 217778  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 12729502 - 12729385
Alignment:
Q  97 aatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaa 196  Q
    |||||||||| |||||||||| |||||| ||||  |||||||||| |||| ||||  |||||||||||| ||| ||||||||| || ||| |||| ||||    
T  12729502 aatccttgacatgacttgcacattcacaccaagcatatcgacaattgtagtttactgaataaagttctgtcaatttctctcgtgca-ctagagaaaagaa 12729404  T
Q  197 cgaacaatttagtataatt 215  Q
     |||  |||||||||||||    
T  12729403 agaattatttagtataatt 12729385  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 28696007 - 28696085
Alignment:
Q  15 cataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 93  Q
    |||||||||||  ||||||||||| ||||||||| |||| ||| |||||||||||||||||||||  |||| |||||||    
T  28696007 cataaattccaaagcgtgtgtgggacacactaacttttaggtttgattcgccctcaccagttatgtcaaccagatgcaa 28696085  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 12729621 - 12729541
Alignment:
Q  13 cacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 93  Q
    ||||| |||||||  | ||||||||| ||||||||| |||| || |||||||||  |||||||||||| ||||||||||||    
T  12729621 cacatgaattccaaagagtgtgtgggacacactaacctttaggtacgattcgcctccaccagttatgccaaccggatgcaa 12729541  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 44729311 - 44729228
Alignment:
Q  10 gtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 93  Q
    ||||||||||||||||  |||||||||||  |||||||| |||| |||| |||| |||   | |||||||| ||||||||||||    
T  44729311 gtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttcaattcacccctgcgagttatgccaaccggatgcaa 44729228  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 11932066 - 11931984
Alignment:
Q  97 aatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgt 179  Q
    ||||||||| |||||||||   |||||| ||||| ||||||||||||||| ||| | |||||| ||||| |||||||||||||    
T  11932066 aatccttgatgtgacttgcttattcacaccaagtttatcgacaatggtagtttatagaataaaattctgtcaaattctctcgt 11931984  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 11932187 - 11932104
Alignment:
Q  10 gtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 93  Q
    ||||||||||||| ||  || ||||| || ||||||||| |||| ||| ||||||||| ||| |||||||| ||||||||||||    
T  11932187 gtgcacataaatttcaaagcatgtgttggacacactaacctttaggtttgattcgcccccactagttatgccaaccggatgcaa 11932104  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 20251523 - 20251439
Alignment:
Q  96 gaatccttgacgtgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttctgacaaattctctcgt 179  Q
    ||||| |||| ||| |||| || ||||||||||||||||||| ||||| ||| ||||| |||||||||||| ||| |||||||||    
T  20251523 gaatcattgatgtgccttgtacattcacatcaagtgtatcgatcaatgatagtttacataataaagttctgtcaatttctctcgt 20251439  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 34681118 - 34681195
Alignment:
Q  108 tgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttctgacaaattctctcgtacacc 184  Q
    |||||||||| ||||||||||| ||||||| ||||| ||| ||||  ||||||||| || ||| ||||||||| ||||    
T  34681118 tgacttgcacattcacatcaagcgtatcgatcaatgatagtttacgtaataaagttttgtcaatttctctcgttcacc 34681195  T

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