View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12560_high_3 (Length: 472)
Name: NF12560_high_3
Description: NF12560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12560_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 16 - 454
Target Start/End: Original strand, 37163060 - 37163498
Alignment:
| Q |
16 |
atgaataacaaaaggtttttggttcttctttggaacctgtttcaaagcatcattgattttcttgaactttccactaccatctttagccacaaccacatta |
115 |
Q |
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| T |
37163060 |
atgaataacaaaaggtttttggttcttctttggaacctgtttcaaagcatcattgattttcttaaactttccactaccatctttagccacaaccacatta |
37163159 |
T |
|
| Q |
116 |
gccttgagtttatgttgatttacatgaagaagtcttcgaacaccaacacttaaaccatcaccaacccaagaaggaacatcattaacatcatctttagcaa |
215 |
Q |
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| T |
37163160 |
gccttgagtttatgttgatttacatgaagaagtcttcgaacaccaacacttaaaccatcaccaacccaagaaggaacatcattaacatcatctttagcaa |
37163259 |
T |
|
| Q |
216 |
caacttgttcacccacatactcgcccttataatcatcaataagtcgacgtccatctgttgtcgcgttcaaatccaaaacattatctgccaaatctgaaat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37163260 |
caacttgttcacccacatactcgcccttataatcatcaataagacgacgtccatctgttgtcgcgttcaaatccaaaacattatctgccaaatctgaaat |
37163359 |
T |
|
| Q |
316 |
gacagcaagtgcattgctactcatatgcattgaagttgttaaaatattcttcattttcttgctagcatcactagtagtattctcaaaaccatctaaacaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37163360 |
gacagcaagtgcattgctactcatatgcattgaagttgttaaaatattcttcattttcttgctagcatcactagtagtattctcaaaaccatctaaacaa |
37163459 |
T |
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| Q |
416 |
gtttcttggtatgtaattgcaccacttaaccaaaccttt |
454 |
Q |
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| T |
37163460 |
gtttcttggtatgtaattgcaccacttaaccaaaccttt |
37163498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 327 - 447
Target Start/End: Complemental strand, 46314825 - 46314705
Alignment:
| Q |
327 |
cattgctactcatatgcattgaagttgttaaaatattcttcattttcttgctagcatcactagtagtattctcaaaaccatctaaacaagtttcttggta |
426 |
Q |
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||||||||||||||||||| |||||| |||| | |||||||| || | |||||| | ||||||||||||||| |||| ||||| ||||||||||| |
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| T |
46314825 |
cattgctactcatatgcatagaagtttgcaaaacctctttcatttttttaccagcatcggttgtagtattctcaaaagcatccaaacatgtttcttggta |
46314726 |
T |
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| Q |
427 |
tgtaattgcaccacttaacca |
447 |
Q |
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||| || ||||| |||||||| |
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| T |
46314725 |
tgtgatggcaccgcttaacca |
46314705 |
T |
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